Wall clock time and date at job start Sun Mar 29 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38115 * 120.40246 * 2 1 4 4 C 1.39625 * 118.33717 * 179.97438 * 3 2 1 5 5 N 1.38536 * 120.53451 * 179.72367 * 4 3 2 6 6 C 1.46502 * 120.00071 * 184.99681 * 5 4 3 7 7 C 1.46502 * 120.00271 * 5.00410 * 5 4 3 8 8 C 1.50702 * 109.46950 * 89.99446 * 7 5 4 9 9 H 1.07995 * 120.00664 * 0.02562 * 8 7 5 10 10 C 1.37875 * 119.99775 * 180.02562 * 8 7 5 11 11 N 1.31520 * 120.00313 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00166 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47318 * 89.99768 * 12 10 8 14 14 H 1.48500 * 109.47275 * 210.00160 * 12 10 8 15 15 H 1.48498 * 109.47144 * 329.99653 * 12 10 8 16 16 N 1.32995 * 118.93597 * 0.02562 * 4 3 2 17 17 C 1.31749 * 120.68414 * 359.97438 * 16 4 3 18 18 C 1.50704 * 119.08173 * 180.02562 * 17 16 4 19 19 N 1.31793 * 121.83541 * 0.02562 * 17 16 4 20 20 H 1.09000 * 109.47065 * 89.99670 * 1 2 3 21 21 H 1.09002 * 109.46841 * 209.99924 * 1 2 3 22 22 H 1.08999 * 109.47234 * 329.99964 * 1 2 3 23 23 H 1.07997 * 120.83191 * 359.95808 * 3 2 1 24 24 H 1.09001 * 109.46521 * 90.00466 * 6 5 4 25 25 H 1.09004 * 109.47521 * 210.00163 * 6 5 4 26 26 H 1.08997 * 109.47304 * 330.00685 * 6 5 4 27 27 H 1.08997 * 109.47454 * 209.99776 * 7 5 4 28 28 H 1.09000 * 109.46452 * 330.00305 * 7 5 4 29 29 H 0.96998 * 120.00255 * 179.97438 * 11 10 8 30 30 H 1.09004 * 109.47001 * 269.99672 * 18 17 16 31 31 H 1.08990 * 109.47017 * 30.00157 * 18 17 16 32 32 H 1.09002 * 109.47100 * 150.00560 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3477 2.3080 -0.0052 6 6 5.8071 2.2436 -0.1151 7 6 3.6776 3.6066 0.0988 8 6 3.5518 3.9922 1.5502 9 1 3.9332 3.3359 2.3184 10 6 2.9498 5.1829 1.8975 11 7 2.4848 5.9821 0.9621 12 14 2.7945 5.6613 3.6965 13 1 3.9937 6.4340 4.1085 14 1 1.5799 6.4949 3.8840 15 1 2.6862 4.4351 4.5271 16 7 4.2024 -0.0454 0.0005 17 6 3.4956 -1.1573 0.0005 18 6 4.2140 -2.4820 0.0011 19 7 2.1777 -1.1433 0.0000 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6862 2.1379 -0.0007 24 1 6.0938 2.2708 -1.1663 25 1 6.2486 3.0944 0.4040 26 1 6.1649 1.3177 0.3353 27 1 4.2624 4.3605 -0.4281 28 1 2.6850 3.5399 -0.3467 29 1 2.0609 6.8196 1.2064 30 1 4.3876 -2.8017 -1.0265 31 1 5.1693 -2.3770 0.5152 32 1 3.6047 -3.2256 0.5148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037756792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:37 Heat of formation + Delta-G solvation = 26.308337 kcal Electronic energy + Delta-G solvation = -14844.407992 eV Core-core repulsion = 12418.206788 eV Total energy + Delta-G solvation = -2426.201205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.82114 -38.18610 -35.31603 -34.78569 -32.98119 -30.14585 -29.92132 -28.78814 -26.69532 -25.16930 -22.76412 -21.83016 -18.73436 -18.55193 -17.78459 -16.63822 -16.35707 -15.92311 -15.32128 -15.12143 -15.04529 -14.16423 -14.08738 -13.74403 -13.48711 -13.17937 -13.14905 -13.08121 -12.95497 -12.77457 -12.61350 -12.24034 -11.94268 -11.48613 -11.37778 -10.67799 -10.38964 -10.06642 -8.77433 -8.21204 -6.43171 0.22147 0.51875 1.36476 1.37830 1.48263 2.09576 2.36819 2.97915 3.01865 3.24867 3.42895 3.88715 4.31699 4.44142 4.51358 4.58219 4.63943 4.75500 4.77400 4.82759 4.86680 4.90981 4.99764 5.11142 5.13329 5.22183 5.55435 5.67363 5.89809 5.97983 6.48011 6.54526 6.72711 7.27363 7.45272 8.78293 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029457 B = 0.008339 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.309668 B = 3356.798380 C = 3791.227112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.190 3.810 3 C -0.312 4.312 4 C 0.429 3.571 5 N -0.591 5.591 6 C 0.102 3.898 7 C 0.265 3.735 8 C -0.549 4.549 9 H 0.046 0.954 10 C 0.021 3.979 11 N -0.920 5.920 12 Si 0.961 3.039 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.276 1.276 16 N -0.603 5.603 17 C 0.337 3.663 18 C -0.072 4.072 19 N -0.584 5.584 20 H 0.097 0.903 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.131 0.869 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.270 0.730 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 -11.034 -1.863 11.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 C -0.340 4.340 4 C 0.186 3.814 5 N -0.301 5.301 6 C -0.041 4.041 7 C 0.144 3.856 8 C -0.588 4.588 9 H 0.064 0.936 10 C -0.179 4.179 11 N -0.559 5.559 12 Si 0.786 3.214 13 H -0.195 1.195 14 H -0.200 1.200 15 H -0.201 1.201 16 N -0.331 5.331 17 C 0.068 3.932 18 C -0.130 4.130 19 N -0.307 5.307 20 H 0.115 0.885 21 H 0.109 0.891 22 H 0.100 0.900 23 H 0.148 0.852 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.752 -11.456 -1.905 11.638 hybrid contribution -0.423 1.716 0.803 1.941 sum 0.329 -9.740 -1.102 9.808 Atomic orbital electron populations 1.20767 0.85804 1.04294 1.04395 1.21842 0.98690 0.87034 0.87488 1.22118 0.94069 1.01136 1.16669 1.18828 0.88990 0.86836 0.86752 1.46961 1.06808 1.03443 1.72843 1.21568 0.78671 1.02748 1.01082 1.19042 0.92566 0.77990 0.96016 1.21648 1.39488 1.04806 0.92862 0.93560 1.25689 0.94422 0.95849 1.01980 1.70007 1.39337 1.12063 1.34463 0.85508 0.78186 0.78119 0.79590 1.19546 1.20021 1.20064 1.67811 1.41583 0.97443 1.26250 1.23736 0.87091 0.94686 0.87709 1.20583 0.99703 0.88032 1.04668 1.68153 1.09478 1.29684 1.23337 0.88451 0.89075 0.90041 0.85160 0.92609 0.91530 0.90673 0.95637 0.95831 0.92067 0.88375 0.89370 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.56 10.21 71.24 0.73 -1.83 16 2 C 0.19 6.97 6.81 42.42 0.29 7.26 16 3 C -0.31 -13.29 9.00 22.58 0.20 -13.09 16 4 C 0.43 19.01 7.39 133.16 0.98 19.99 16 5 N -0.59 -26.71 2.96 -732.64 -2.17 -28.88 16 6 C 0.10 3.81 10.51 127.77 1.34 5.16 16 7 C 0.26 13.51 5.03 85.63 0.43 13.94 16 8 C -0.55 -30.22 9.39 25.60 0.24 -29.98 16 9 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 10 C 0.02 1.14 5.46 84.65 0.46 1.61 16 11 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 12 Si 0.96 43.01 29.54 68.60 2.03 45.03 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 14 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 16 N -0.60 -24.23 9.13 -185.44 -1.69 -25.93 16 17 C 0.34 11.90 7.64 138.77 1.06 12.96 16 18 C -0.07 -1.70 10.32 71.24 0.74 -0.97 16 19 N -0.58 -21.07 10.27 -176.28 -1.81 -22.88 16 20 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 21 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 22 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 23 H 0.13 5.90 6.16 -2.91 -0.02 5.88 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 2.45 8.07 -2.39 -0.02 2.44 16 26 H 0.07 2.68 7.34 -2.39 -0.02 2.66 16 27 H 0.03 1.35 8.07 -2.39 -0.02 1.34 16 28 H 0.02 1.27 6.05 -2.39 -0.01 1.26 16 29 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.37 277.02 4.22 -59.15 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.10 Total: 10.04 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.48 Total: 15.05 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -5.39 Total: -129.27 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.37 4.22 -59.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037756792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.460 kcal (2) G-P(sol) polarization free energy of solvation -63.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds