Wall clock time and date at job start Sun Mar 29 2020 22:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46726 * 2 1 4 4 C 1.38119 * 120.39411 * 124.99944 * 3 2 1 5 5 C 1.39624 * 118.32869 * 179.97438 * 4 3 2 6 6 N 1.38543 * 120.53017 * 180.02562 * 5 4 3 7 7 C 1.46505 * 120.00085 * 185.00322 * 6 5 4 8 8 C 1.46501 * 120.00316 * 5.00689 * 6 5 4 9 9 C 1.50695 * 109.47056 * 89.99554 * 8 6 5 10 10 H 1.07993 * 120.00587 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99481 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99850 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00393 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.46960 * 89.99955 * 13 11 9 15 15 H 1.48500 * 109.47022 * 210.00151 * 13 11 9 16 16 H 1.48504 * 109.46722 * 330.00109 * 13 11 9 17 17 N 1.32991 * 118.93949 * 0.02562 * 5 4 3 18 18 C 1.31753 * 120.68860 * 359.97438 * 17 5 4 19 19 N 1.31794 * 121.82761 * 359.73859 * 18 17 5 20 20 H 1.09002 * 109.46820 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47230 * 299.99743 * 1 2 3 22 22 H 1.09000 * 109.47236 * 60.00148 * 1 2 3 23 23 H 1.08999 * 109.47230 * 240.00257 * 2 1 3 24 24 H 1.09000 * 109.47236 * 119.99852 * 2 1 3 25 25 H 1.07996 * 120.83606 * 359.95670 * 4 3 2 26 26 H 1.09001 * 109.46938 * 89.99753 * 7 6 5 27 27 H 1.08999 * 109.47367 * 210.00082 * 7 6 5 28 28 H 1.09006 * 109.47063 * 329.99918 * 7 6 5 29 29 H 1.09005 * 109.47060 * 210.00234 * 8 6 5 30 30 H 1.09007 * 109.46493 * 329.99717 * 8 6 5 31 31 H 0.97001 * 120.00128 * 179.97438 * 12 11 9 32 32 H 1.07998 * 119.08712 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9094 1.8520 0.9759 5 6 3.3477 3.1771 0.9344 6 7 4.2280 3.6575 1.8902 7 6 4.5950 5.0758 1.9012 8 6 4.7921 2.7472 2.8900 9 6 6.0770 2.1595 2.3659 10 1 6.4376 2.4365 1.3864 11 6 6.7921 1.2680 3.1371 12 7 7.9132 0.7546 2.6796 13 14 6.1681 0.7882 4.8312 14 1 5.2869 -0.4016 4.7155 15 1 7.3207 0.4669 5.7106 16 1 5.4004 1.9179 5.4141 17 7 2.9065 3.9706 -0.0374 18 6 2.0696 3.5169 -0.9482 19 7 1.6419 2.2703 -0.9397 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.2476 1.1812 1.7518 26 1 3.8964 5.6269 2.5308 27 1 5.6050 5.1868 2.2955 28 1 4.5564 5.4689 0.8852 29 1 4.9924 3.2969 3.8097 30 1 4.0820 1.9456 3.0930 31 1 8.4165 0.1276 3.2223 32 1 1.7281 4.1837 -1.7261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040764957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:32 Heat of formation + Delta-G solvation = 47.001592 kcal Electronic energy + Delta-G solvation = -14841.294263 eV Core-core repulsion = 12415.990385 eV Total energy + Delta-G solvation = -2425.303878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35528 -36.65394 -34.43394 -32.72548 -31.23703 -30.28397 -28.58133 -25.89171 -23.80454 -23.69875 -21.93808 -19.98122 -17.10560 -17.02433 -16.54230 -14.89850 -14.79920 -14.52972 -14.18222 -14.12709 -13.45739 -13.26340 -13.05668 -12.52707 -12.10050 -11.81430 -11.60263 -11.30587 -11.07794 -11.00062 -10.73090 -10.52613 -10.01983 -9.99473 -9.59985 -9.10717 -8.76060 -8.59607 -7.10167 -6.24571 -4.26556 1.66127 2.00238 3.14345 3.22069 3.22945 3.62731 4.22796 4.47463 4.59322 4.81600 5.05275 5.20558 5.38744 5.47987 5.62257 5.88401 5.92155 6.00028 6.01561 6.07613 6.11698 6.30678 6.35303 6.39991 6.56832 6.61052 6.95737 7.33069 7.39788 7.98885 8.02300 8.35379 8.80330 8.88311 9.33464 10.88270 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.009218 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.782974 B = 3036.829387 C = 3696.538772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 C 0.190 3.810 4 C -0.276 4.276 5 C 0.447 3.553 6 N -0.574 5.574 7 C 0.100 3.900 8 C 0.220 3.780 9 C -0.541 4.541 10 H 0.077 0.923 11 C 0.076 3.924 12 N -0.890 5.890 13 Si 0.872 3.128 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.265 1.265 17 N -0.594 5.594 18 C 0.328 3.672 19 N -0.578 5.578 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.143 0.857 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.426 1.866 -1.694 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C 0.050 3.950 4 C -0.305 4.305 5 C 0.203 3.797 6 N -0.283 5.283 7 C -0.044 4.044 8 C 0.099 3.901 9 C -0.580 4.580 10 H 0.095 0.905 11 C -0.128 4.128 12 N -0.528 5.528 13 Si 0.699 3.301 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.189 1.189 17 N -0.321 5.321 18 C 0.038 3.962 19 N -0.299 5.299 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.161 0.839 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.387 2.392 -2.127 11.828 hybrid contribution 0.365 -0.808 1.526 1.765 sum -11.022 1.584 -0.601 11.151 Atomic orbital electron populations 1.21628 0.94329 1.01266 1.02461 1.20457 0.96623 0.90631 1.03290 1.21173 0.89923 0.95507 0.88434 1.22093 1.05785 0.97227 1.05351 1.18548 0.86102 0.88705 0.86333 1.46655 1.43031 1.09159 1.29435 1.21517 0.99850 0.80729 1.02286 1.19831 0.94356 0.88990 0.86909 1.21385 1.05280 1.26307 1.05014 0.90488 1.24878 0.94601 0.95326 0.97977 1.69892 1.14896 1.30208 1.37758 0.86912 0.79055 0.79662 0.84517 1.19734 1.20731 1.18916 1.67902 1.18579 1.39231 1.06377 1.24374 0.88227 0.90094 0.93538 1.68072 1.30151 1.04546 1.27149 0.92625 0.93135 0.91631 0.89920 0.90248 0.83888 0.94171 0.91181 0.90957 0.94487 0.95172 0.92295 0.79896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.78 37.16 0.36 -1.31 16 2 C -0.07 -1.01 6.36 -27.88 -0.18 -1.19 16 3 C 0.19 3.37 6.19 -82.33 -0.51 2.86 16 4 C -0.28 -5.50 8.95 -39.11 -0.35 -5.85 16 5 C 0.45 9.35 7.39 -154.78 -1.14 8.20 16 6 N -0.57 -12.18 2.96 -182.91 -0.54 -12.73 16 7 C 0.10 1.79 10.51 59.85 0.63 2.42 16 8 C 0.22 5.03 4.10 -5.20 -0.02 5.01 16 9 C -0.54 -14.73 9.94 -34.44 -0.34 -15.07 16 10 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 11 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 12 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 13 Si 0.87 19.96 27.47 -169.99 -4.67 15.29 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 17 N -0.59 -11.51 9.23 -13.81 -0.13 -11.64 16 18 C 0.33 5.59 12.28 -92.19 -1.13 4.46 16 19 N -0.58 -10.16 10.04 -10.88 -0.11 -10.27 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.82 7.98 -51.93 -0.41 0.41 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 25 H 0.14 2.88 6.10 -52.49 -0.32 2.56 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.07 1.27 7.33 -51.93 -0.38 0.89 16 29 H 0.04 0.82 7.13 -51.93 -0.37 0.45 16 30 H 0.03 0.67 5.47 -51.92 -0.28 0.39 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 272.42 15.07 4.11 4.11 Total: -1.00 -30.37 272.42 -7.65 -38.03 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.30 Total: 1.20 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.78 Total: 1.51 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.00 Total: -60.13 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.37 -7.65 -38.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040764957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.027 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds