Wall clock time and date at job start Sun Mar 29 2020 22:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46726 * 2 1 4 4 C 1.38119 * 120.39411 * 124.99944 * 3 2 1 5 5 C 1.39624 * 118.32869 * 179.97438 * 4 3 2 6 6 N 1.38543 * 120.53017 * 180.02562 * 5 4 3 7 7 C 1.46505 * 120.00085 * 185.00322 * 6 5 4 8 8 C 1.46501 * 120.00316 * 5.00689 * 6 5 4 9 9 C 1.50695 * 109.47056 * 89.99554 * 8 6 5 10 10 H 1.07993 * 120.00587 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99481 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99850 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00393 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.46960 * 89.99955 * 13 11 9 15 15 H 1.48500 * 109.47022 * 210.00151 * 13 11 9 16 16 H 1.48504 * 109.46722 * 330.00109 * 13 11 9 17 17 N 1.32991 * 118.93949 * 0.02562 * 5 4 3 18 18 C 1.31753 * 120.68860 * 359.97438 * 17 5 4 19 19 N 1.31794 * 121.82761 * 359.73859 * 18 17 5 20 20 H 1.09002 * 109.46820 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47230 * 299.99743 * 1 2 3 22 22 H 1.09000 * 109.47236 * 60.00148 * 1 2 3 23 23 H 1.08999 * 109.47230 * 240.00257 * 2 1 3 24 24 H 1.09000 * 109.47236 * 119.99852 * 2 1 3 25 25 H 1.07996 * 120.83606 * 359.95670 * 4 3 2 26 26 H 1.09001 * 109.46938 * 89.99753 * 7 6 5 27 27 H 1.08999 * 109.47367 * 210.00082 * 7 6 5 28 28 H 1.09006 * 109.47063 * 329.99918 * 7 6 5 29 29 H 1.09005 * 109.47060 * 210.00234 * 8 6 5 30 30 H 1.09007 * 109.46493 * 329.99717 * 8 6 5 31 31 H 0.97001 * 120.00128 * 179.97438 * 12 11 9 32 32 H 1.07998 * 119.08712 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9094 1.8520 0.9759 5 6 3.3477 3.1771 0.9344 6 7 4.2280 3.6575 1.8902 7 6 4.5950 5.0758 1.9012 8 6 4.7921 2.7472 2.8900 9 6 6.0770 2.1595 2.3659 10 1 6.4376 2.4365 1.3864 11 6 6.7921 1.2680 3.1371 12 7 7.9132 0.7546 2.6796 13 14 6.1681 0.7882 4.8312 14 1 5.2869 -0.4016 4.7155 15 1 7.3207 0.4669 5.7106 16 1 5.4004 1.9179 5.4141 17 7 2.9065 3.9706 -0.0374 18 6 2.0696 3.5169 -0.9482 19 7 1.6419 2.2703 -0.9397 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.2476 1.1812 1.7518 26 1 3.8964 5.6269 2.5308 27 1 5.6050 5.1868 2.2955 28 1 4.5564 5.4689 0.8852 29 1 4.9924 3.2969 3.8097 30 1 4.0820 1.9456 3.0930 31 1 8.4165 0.1276 3.2223 32 1 1.7281 4.1837 -1.7261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040764957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:32 Heat of formation + Delta-G solvation = 29.291545 kcal Electronic energy + Delta-G solvation = -14842.062228 eV Core-core repulsion = 12415.990385 eV Total energy + Delta-G solvation = -2426.071843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.79760 -38.22357 -35.76999 -34.71951 -32.69784 -31.61392 -30.40335 -27.37997 -25.45201 -24.98989 -23.50731 -21.45935 -19.15385 -18.51907 -18.03986 -16.55983 -16.31151 -16.06123 -15.66438 -15.58884 -14.83241 -14.60309 -14.45543 -14.35247 -13.61100 -13.26612 -13.11756 -12.79326 -12.50018 -12.34647 -12.21290 -12.01968 -11.79512 -11.57041 -11.37676 -10.84635 -10.56951 -10.04206 -8.69439 -8.35732 -6.44579 0.23998 0.50749 1.36384 1.37428 1.47863 2.08119 2.29596 2.97384 3.04255 3.32592 3.48979 3.81439 4.23123 4.30555 4.41509 4.44222 4.52400 4.61488 4.74456 4.79242 4.84018 4.91504 4.95936 5.08149 5.20338 5.36705 5.38884 5.58175 5.76673 6.16865 6.46745 6.53644 6.62141 7.20070 7.43268 8.80995 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.009218 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.782974 B = 3036.829387 C = 3696.538772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C 0.194 3.806 4 C -0.303 4.303 5 C 0.427 3.573 6 N -0.589 5.589 7 C 0.100 3.900 8 C 0.230 3.770 9 C -0.546 4.546 10 H 0.022 0.978 11 C 0.016 3.984 12 N -0.943 5.943 13 Si 0.947 3.053 14 H -0.260 1.260 15 H -0.281 1.281 16 H -0.239 1.239 17 N -0.605 5.605 18 C 0.327 3.673 19 N -0.579 5.579 20 H 0.081 0.919 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.135 0.865 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.270 0.730 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 1.695 -0.873 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 C 0.053 3.947 4 C -0.331 4.331 5 C 0.184 3.816 6 N -0.299 5.299 7 C -0.042 4.042 8 C 0.108 3.892 9 C -0.584 4.584 10 H 0.040 0.960 11 C -0.182 4.182 12 N -0.582 5.582 13 Si 0.769 3.231 14 H -0.184 1.184 15 H -0.207 1.207 16 H -0.162 1.162 17 N -0.331 5.331 18 C 0.037 3.963 19 N -0.300 5.300 20 H 0.099 0.901 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.153 0.847 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -13.568 2.254 -1.334 13.819 hybrid contribution 1.030 -0.731 1.089 1.667 sum -12.539 1.523 -0.245 12.633 Atomic orbital electron populations 1.21579 0.92435 1.02854 1.02002 1.20612 0.98160 0.88380 1.04055 1.21747 0.88584 0.97076 0.87325 1.22183 1.07399 0.97061 1.06476 1.18828 0.86523 0.89448 0.86808 1.46676 1.43592 1.09942 1.29670 1.21609 1.00234 0.79563 1.02809 1.19589 0.92343 0.89676 0.87553 1.21531 1.07248 1.26703 1.02932 0.95982 1.25872 0.94486 0.94983 1.02894 1.70062 1.16784 1.31420 1.39980 0.85726 0.78751 0.80355 0.78284 1.18436 1.20665 1.16209 1.67962 1.19279 1.39322 1.06541 1.25242 0.86965 0.90581 0.93473 1.68216 1.30060 1.04789 1.26895 0.90056 0.93478 0.92138 0.89044 0.89553 0.84708 0.91665 0.91683 0.91016 0.93089 0.94101 0.92096 0.75955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.78 71.98 0.70 -2.11 16 2 C -0.07 -1.95 6.36 29.85 0.19 -1.76 16 3 C 0.19 6.65 6.19 42.42 0.26 6.91 16 4 C -0.30 -12.00 8.95 22.58 0.20 -11.79 16 5 C 0.43 17.76 7.39 133.16 0.98 18.74 16 6 N -0.59 -24.92 2.96 -732.62 -2.17 -27.09 16 7 C 0.10 3.55 10.51 127.77 1.34 4.89 16 8 C 0.23 10.42 4.10 85.63 0.35 10.77 16 9 C -0.55 -30.46 9.94 25.60 0.25 -30.21 16 10 H 0.02 1.43 8.06 -2.91 -0.02 1.40 16 11 C 0.02 0.92 5.47 84.65 0.46 1.38 16 12 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 13 Si 0.95 40.57 27.47 68.60 1.88 42.46 16 14 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 15 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 17 N -0.60 -22.85 9.23 -197.61 -1.82 -24.67 16 18 C 0.33 10.54 12.28 180.90 2.22 12.76 16 19 N -0.58 -19.33 10.04 -188.33 -1.89 -21.22 16 20 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.36 7.98 -2.39 -0.02 1.34 16 23 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.09 2.14 7.93 -2.39 -0.02 2.12 16 25 H 0.14 5.44 6.10 -2.91 -0.02 5.42 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 28 H 0.07 2.50 7.33 -2.38 -0.02 2.48 16 29 H 0.05 2.17 7.13 -2.38 -0.02 2.15 16 30 H 0.04 1.77 5.47 -2.38 -0.01 1.76 16 31 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.22 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -66.92 272.42 4.32 -62.59 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.05 Total: 15.35 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.98 Total: 9.58 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -5.58 Total: -129.98 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.88 Total: 42.46 kcal Total: -66.92 4.32 -62.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040764957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.886 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds