Wall clock time and date at job start Sun Mar 29 2020 22:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47259 * 2 1 4 4 C 1.46899 * 111.00035 * 199.78948 * 3 2 1 5 5 C 1.50700 * 109.47025 * 66.04769 * 4 3 2 6 6 H 1.08001 * 120.00187 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99886 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00163 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00040 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47155 * 89.99935 * 9 7 5 11 11 H 1.48495 * 109.47040 * 210.00334 * 9 7 5 12 12 H 1.48505 * 109.46748 * 330.00109 * 9 7 5 13 13 C 1.39294 * 110.99677 * 75.83845 * 3 2 1 14 14 N 1.32251 * 119.74301 * 68.03664 * 13 3 2 15 15 C 1.32051 * 121.69179 * 179.97438 * 14 13 3 16 16 C 1.38007 * 120.99251 * 0.02562 * 15 14 13 17 17 C 1.38834 * 119.38567 * 359.97438 * 16 15 14 18 18 C 1.38854 * 118.44096 * 359.97438 * 17 16 15 19 19 N 1.40010 * 120.51679 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47064 * 54.86187 * 1 2 3 21 21 H 1.09002 * 109.47123 * 174.86060 * 1 2 3 22 22 H 1.08999 * 109.47425 * 294.85841 * 1 2 3 23 23 H 1.09000 * 109.47330 * 240.00006 * 2 1 3 24 24 H 1.09005 * 109.46993 * 120.00233 * 2 1 3 25 25 H 1.08997 * 109.47183 * 186.04617 * 4 3 2 26 26 H 1.09000 * 109.47147 * 306.04596 * 4 3 2 27 27 H 0.97002 * 120.00127 * 179.97438 * 8 7 5 28 28 H 1.08004 * 119.49824 * 180.02562 * 15 14 13 29 29 H 1.08005 * 120.30580 * 179.97438 * 16 15 14 30 30 H 1.07999 * 120.78064 * 180.02562 * 17 16 15 31 31 H 0.97005 * 119.99441 * 354.90939 * 19 18 17 32 32 H 0.96999 * 120.00388 * 174.90545 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4118 1.4511 -0.4643 5 6 3.4772 1.0478 -1.9149 6 1 2.5749 0.7696 -2.4393 7 6 4.6889 1.0338 -2.5725 8 7 5.7875 1.3730 -1.9341 9 14 4.7700 0.5345 -4.3707 10 1 4.6011 1.7364 -5.2263 11 1 6.0866 -0.0921 -4.6516 12 1 3.6864 -0.4379 -4.6637 13 6 1.8861 1.9616 1.2609 14 7 2.6275 1.5235 2.2646 15 6 2.5328 2.0424 3.4752 16 6 1.6495 3.0689 3.7412 17 6 0.8501 3.5619 2.7188 18 6 0.9706 2.9990 1.4552 19 7 0.1854 3.4624 0.3927 20 1 -0.3633 0.5915 -0.8404 21 1 -0.3633 -1.0235 -0.0921 22 1 -0.3634 0.4320 0.9324 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.7838 2.4696 -0.3533 26 1 4.0254 0.7735 0.1293 27 1 6.6401 1.3628 -2.3967 28 1 3.1559 1.6577 4.2690 29 1 1.5808 3.4848 4.7356 30 1 0.1515 4.3650 2.9018 31 1 -0.5002 4.1300 0.5515 32 1 0.3269 3.1159 -0.5022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:55 Heat of formation + Delta-G solvation = 19.702415 kcal Electronic energy + Delta-G solvation = -15114.746299 eV Core-core repulsion = 12688.258640 eV Total energy + Delta-G solvation = -2426.487659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31323 -37.95155 -35.79829 -34.76295 -32.46734 -31.45964 -29.81045 -27.93960 -24.75509 -24.25377 -23.43206 -21.67929 -18.78010 -18.05313 -17.80984 -17.29145 -16.82113 -15.97493 -15.85012 -15.42563 -14.71329 -14.38370 -14.23203 -14.10933 -13.83917 -13.15917 -12.89892 -12.71504 -12.61618 -12.38766 -12.10062 -11.96347 -11.79838 -11.39961 -10.63541 -10.38534 -10.24942 -9.31917 -8.39085 -8.18526 -6.31727 0.38584 0.67617 1.41386 1.43905 1.55075 2.40075 3.02277 3.07931 3.10492 3.14622 3.92962 4.12321 4.25356 4.35582 4.38722 4.58763 4.75026 4.79512 4.99024 5.04356 5.12376 5.21512 5.24962 5.34444 5.44411 5.64898 5.79877 6.05065 6.19318 6.48167 6.83277 6.87033 7.12894 7.33578 7.38911 8.91910 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.008240 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.232024 B = 3397.239837 C = 3642.614176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.060 3.940 3 N -0.476 5.476 4 C 0.229 3.771 5 C -0.523 4.523 6 H 0.072 0.928 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.976 3.024 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.260 1.260 13 C 0.195 3.805 14 N -0.516 5.516 15 C 0.016 3.984 16 C -0.121 4.121 17 C -0.162 4.162 18 C 0.188 3.812 19 N -0.849 5.849 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.014 0.986 25 H -0.015 1.015 26 H -0.038 1.038 27 H 0.264 0.736 28 H 0.160 0.840 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.409 0.591 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 3.674 7.608 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.067 4.067 3 N -0.199 5.199 4 C 0.103 3.897 5 C -0.561 4.561 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.800 3.200 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.184 1.184 13 C -0.040 4.040 14 N -0.228 5.228 15 C -0.143 4.143 16 C -0.141 4.141 17 C -0.193 4.193 18 C 0.077 3.923 19 N -0.389 5.389 20 H 0.084 0.916 21 H 0.091 0.909 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.033 0.967 25 H 0.003 0.997 26 H -0.020 1.020 27 H 0.072 0.928 28 H 0.177 0.823 29 H 0.189 0.811 30 H 0.186 0.814 31 H 0.239 0.761 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.663 3.270 7.105 14.884 hybrid contribution 0.638 0.041 -0.322 0.716 sum -12.025 3.311 6.783 14.197 Atomic orbital electron populations 1.21604 0.92937 1.02068 1.01466 1.22023 0.96826 0.87990 0.99845 1.60221 1.22841 1.18757 1.18070 1.19148 0.82768 0.93329 0.94443 1.21469 0.93900 1.45016 0.95750 0.90986 1.26023 0.95025 0.95272 1.03656 1.70144 0.99189 1.49538 1.38823 0.85283 0.77597 0.78694 0.78413 1.19664 1.21051 1.18351 1.19903 0.97006 0.97313 0.89735 1.67554 1.23221 1.30038 1.01969 1.22666 1.00893 0.97720 0.93032 1.22194 0.94750 0.95997 1.01118 1.21376 1.04110 1.03325 0.90511 1.18583 0.91414 0.91815 0.90462 1.42338 1.39796 1.48037 1.08691 0.91586 0.90907 0.93915 0.91342 0.96714 0.99723 1.02013 0.92770 0.82255 0.81141 0.81441 0.76057 0.76389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 9.96 71.98 0.72 -3.21 16 2 C 0.06 2.56 5.50 86.30 0.47 3.04 16 3 N -0.48 -21.99 3.61 -705.42 -2.54 -24.53 16 4 C 0.23 13.23 4.41 85.56 0.38 13.61 16 5 C -0.52 -30.44 8.23 25.60 0.21 -30.23 16 6 H 0.07 3.98 7.31 -2.91 -0.02 3.96 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 9 Si 0.98 44.94 29.54 68.60 2.03 46.97 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.19 8.24 4.74 133.15 0.63 8.87 16 14 N -0.52 -22.40 9.52 -192.62 -1.83 -24.24 16 15 C 0.02 0.55 11.17 84.61 0.94 1.49 16 16 C -0.12 -3.03 10.10 22.36 0.23 -2.80 16 17 C -0.16 -4.14 10.04 22.56 0.23 -3.91 16 18 C 0.19 6.19 6.81 38.34 0.26 6.45 16 19 N -0.85 -22.71 9.09 -50.70 -0.46 -23.17 16 20 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.04 1.34 7.84 -2.39 -0.02 1.32 16 23 H 0.07 3.12 6.58 -2.39 -0.02 3.11 16 24 H 0.01 0.66 7.67 -2.38 -0.02 0.64 16 25 H -0.02 -0.99 8.06 -2.39 -0.02 -1.01 16 26 H -0.04 -2.49 8.04 -2.39 -0.02 -2.50 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.41 7.54 8.86 -92.70 -0.82 6.72 16 32 H 0.41 12.26 8.15 -92.71 -0.76 11.50 16 Total: -1.00 -73.26 274.03 1.55 -71.70 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.45 Total: 18.24 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 4.53 Total: -6.34 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -4.55 Total: -130.56 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.26 1.55 -71.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.404 kcal (2) G-P(sol) polarization free energy of solvation -73.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds