Wall clock time and date at job start Sun Mar 29 2020 22:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47225 * 2 1 4 4 C 1.46507 * 119.99896 * 270.00270 * 3 2 1 5 5 C 1.50694 * 109.46918 * 269.99691 * 4 3 2 6 6 H 1.08008 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00213 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99578 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47326 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47459 * 120.00290 * 9 7 5 12 12 H 1.48507 * 109.47027 * 239.99913 * 9 7 5 13 13 C 1.39314 * 120.00101 * 90.00072 * 3 2 1 14 14 C 1.39087 * 119.62358 * 4.99927 * 13 3 2 15 15 C 1.38285 * 119.16932 * 179.97438 * 14 13 3 16 16 C 1.39417 * 118.44666 * 0.02562 * 15 14 13 17 17 N 1.40043 * 120.40612 * 180.02562 * 16 15 14 18 18 C 1.38627 * 119.18282 * 359.97438 * 16 15 14 19 19 N 1.31997 * 120.75680 * 0.03217 * 18 16 15 20 20 H 1.08996 * 109.46933 * 60.00179 * 1 2 3 21 21 H 1.08997 * 109.47115 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46852 * 299.99760 * 1 2 3 23 23 H 1.08997 * 109.46755 * 239.99693 * 2 1 3 24 24 H 1.08996 * 109.46933 * 119.99821 * 2 1 3 25 25 H 1.08997 * 109.46832 * 30.00121 * 4 3 2 26 26 H 1.09005 * 109.46857 * 149.99911 * 4 3 2 27 27 H 0.96999 * 119.99489 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.41560 * 0.25202 * 14 13 3 29 29 H 1.08001 * 120.77431 * 180.02562 * 15 14 13 30 30 H 0.97001 * 119.99864 * 359.97438 * 17 16 15 31 31 H 0.96996 * 119.99730 * 179.97438 * 17 16 15 32 32 H 1.07998 * 119.62657 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6182 9 14 5.9131 2.0955 -3.4176 10 1 6.6008 1.2405 -2.4170 11 1 5.9202 1.4163 -4.7381 12 1 6.6209 3.3965 -3.5264 13 6 2.2506 2.0379 1.2065 14 6 2.1169 1.3435 2.4041 15 6 2.3501 2.0044 3.5962 16 6 2.7121 3.3500 3.5497 17 7 2.9585 4.0590 4.7319 18 6 2.8261 3.9771 2.3186 19 7 2.5958 3.3153 1.2000 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5817 1.6877 -2.0284 26 1 2.0955 3.1411 -1.1384 27 1 3.6749 3.5155 -4.4444 28 1 1.8387 0.2999 2.4029 29 1 2.2542 1.4903 4.5411 30 1 2.8773 3.6141 5.5901 31 1 3.2103 4.9949 4.6927 32 1 3.1065 5.0191 2.2742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:58 Heat of formation + Delta-G solvation = 45.294913 kcal Electronic energy + Delta-G solvation = -14826.216287 eV Core-core repulsion = 12400.838401 eV Total energy + Delta-G solvation = -2425.377885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.57008 -36.44181 -33.95077 -32.70421 -31.26254 -30.17361 -28.03417 -25.91783 -23.62891 -22.56670 -22.08346 -19.98947 -16.93059 -16.80222 -16.29224 -15.85319 -14.92536 -14.33656 -14.15204 -13.99746 -13.42044 -12.74956 -12.71861 -12.43459 -11.98868 -11.83572 -11.48255 -11.05818 -10.91648 -10.71273 -10.49063 -10.38396 -9.98678 -9.49735 -9.04584 -8.55318 -8.31685 -8.07732 -6.21861 -5.82859 -3.96582 1.91675 2.31466 3.34502 3.41830 3.46679 3.99849 4.31149 4.52480 4.70560 5.25029 5.35012 5.40082 5.53861 5.69143 5.74761 5.82550 5.94937 6.15203 6.29186 6.37811 6.50658 6.60919 6.68450 6.94413 7.29510 7.64135 7.80848 7.99199 8.07046 8.18680 8.41352 8.54527 9.05096 9.18353 9.67476 11.14270 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.008796 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.228631 B = 3182.533795 C = 3874.130670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 N -0.597 5.597 4 C 0.256 3.744 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.381 3.619 14 C -0.217 4.217 15 C -0.109 4.109 16 C 0.075 3.925 17 N -0.888 5.888 18 C 0.085 3.915 19 N -0.489 5.489 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.260 0.740 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.389 0.611 31 H 0.392 0.608 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -2.612 13.232 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.001 3.999 3 N -0.309 5.309 4 C 0.137 3.863 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.144 3.856 14 C -0.243 4.243 15 C -0.139 4.139 16 C -0.030 4.030 17 N -0.432 5.432 18 C -0.079 4.079 19 N -0.204 5.204 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.216 0.784 31 H 0.219 0.781 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.422 -2.235 11.951 12.631 hybrid contribution 1.052 -0.336 0.744 1.332 sum -2.370 -2.571 12.695 13.168 Atomic orbital electron populations 1.22234 0.97407 1.00899 1.02207 1.21238 0.92980 0.83657 1.02037 1.46956 1.67908 1.11929 1.04103 1.19177 0.95410 0.93714 0.78026 1.21584 0.97292 1.31000 1.05793 0.92717 1.24920 0.97502 0.95226 0.96538 1.69953 1.35400 1.33994 1.14340 0.86523 0.85170 0.77918 0.78263 1.19955 1.21109 1.21034 1.18268 0.92710 0.88303 0.86287 1.21201 1.10844 1.00654 0.91640 1.20608 1.02838 0.92739 0.97751 1.18488 1.03748 0.92642 0.88137 1.42046 1.83050 1.13369 1.04709 1.21924 1.00965 0.99264 0.85754 1.67217 1.15869 1.07877 1.29433 0.92323 0.92597 0.93067 0.90410 0.92069 0.95845 0.93477 0.93006 0.85766 0.86362 0.78412 0.78086 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.13 2.24 5.97 -4.04 -0.02 2.21 16 3 N -0.60 -13.36 2.58 -175.14 -0.45 -13.81 16 4 C 0.26 6.87 5.23 -5.19 -0.03 6.85 16 5 C -0.52 -14.98 9.39 -34.44 -0.32 -15.31 16 6 H 0.05 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.38 8.20 7.38 -154.80 -1.14 7.05 16 14 C -0.22 -3.82 9.27 -39.25 -0.36 -4.18 16 15 C -0.11 -1.68 10.04 -39.13 -0.39 -2.08 16 16 C 0.07 1.16 6.79 -83.52 -0.57 0.59 16 17 N -0.89 -9.92 9.11 32.53 0.30 -9.62 16 18 C 0.08 1.55 11.05 -17.34 -0.19 1.36 16 19 N -0.49 -11.03 9.07 -12.23 -0.11 -11.14 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 24 H 0.06 0.96 5.97 -51.93 -0.31 0.65 16 25 H 0.02 0.65 8.07 -51.93 -0.42 0.23 16 26 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.12 1.91 6.02 -52.49 -0.32 1.60 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.39 3.50 8.86 -40.82 -0.36 3.13 16 31 H 0.39 3.69 8.85 -40.82 -0.36 3.33 16 32 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -32.57 275.52 -7.37 -39.95 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.23 Total: 3.61 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.75 Total: -4.06 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.47 Total: -60.94 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.57 -7.37 -39.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.241 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds