Wall clock time and date at job start Sun Mar 29 2020 22:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47225 * 2 1 4 4 C 1.46507 * 119.99896 * 270.00270 * 3 2 1 5 5 C 1.50694 * 109.46918 * 269.99691 * 4 3 2 6 6 H 1.08008 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00213 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99578 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47326 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47459 * 120.00290 * 9 7 5 12 12 H 1.48507 * 109.47027 * 239.99913 * 9 7 5 13 13 C 1.39314 * 120.00101 * 90.00072 * 3 2 1 14 14 C 1.39087 * 119.62358 * 4.99927 * 13 3 2 15 15 C 1.38285 * 119.16932 * 179.97438 * 14 13 3 16 16 C 1.39417 * 118.44666 * 0.02562 * 15 14 13 17 17 N 1.40043 * 120.40612 * 180.02562 * 16 15 14 18 18 C 1.38627 * 119.18282 * 359.97438 * 16 15 14 19 19 N 1.31997 * 120.75680 * 0.03217 * 18 16 15 20 20 H 1.08996 * 109.46933 * 60.00179 * 1 2 3 21 21 H 1.08997 * 109.47115 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46852 * 299.99760 * 1 2 3 23 23 H 1.08997 * 109.46755 * 239.99693 * 2 1 3 24 24 H 1.08996 * 109.46933 * 119.99821 * 2 1 3 25 25 H 1.08997 * 109.46832 * 30.00121 * 4 3 2 26 26 H 1.09005 * 109.46857 * 149.99911 * 4 3 2 27 27 H 0.96999 * 119.99489 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.41560 * 0.25202 * 14 13 3 29 29 H 1.08001 * 120.77431 * 180.02562 * 15 14 13 30 30 H 0.97001 * 119.99864 * 359.97438 * 17 16 15 31 31 H 0.96996 * 119.99730 * 179.97438 * 17 16 15 32 32 H 1.07998 * 119.62657 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6182 9 14 5.9131 2.0955 -3.4176 10 1 6.6008 1.2405 -2.4170 11 1 5.9202 1.4163 -4.7381 12 1 6.6209 3.3965 -3.5264 13 6 2.2506 2.0379 1.2065 14 6 2.1169 1.3435 2.4041 15 6 2.3501 2.0044 3.5962 16 6 2.7121 3.3500 3.5497 17 7 2.9585 4.0590 4.7319 18 6 2.8261 3.9771 2.3186 19 7 2.5958 3.3153 1.2000 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5817 1.6877 -2.0284 26 1 2.0955 3.1411 -1.1384 27 1 3.6749 3.5155 -4.4444 28 1 1.8387 0.2999 2.4029 29 1 2.2542 1.4903 4.5411 30 1 2.8773 3.6141 5.5901 31 1 3.2103 4.9949 4.6927 32 1 3.1065 5.0191 2.2742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:58 Heat of formation + Delta-G solvation = 23.158871 kcal Electronic energy + Delta-G solvation = -14827.176177 eV Core-core repulsion = 12400.838401 eV Total energy + Delta-G solvation = -2426.337776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98013 -37.94376 -35.28971 -34.76861 -32.67471 -31.64431 -29.71273 -27.59313 -25.32880 -23.97877 -23.66946 -21.49690 -18.61378 -18.17899 -18.07277 -17.24265 -16.62157 -15.90769 -15.66204 -15.41992 -14.90587 -14.38850 -14.09755 -14.01588 -13.50740 -13.29709 -13.17215 -12.87917 -12.62191 -12.35955 -12.14989 -12.13439 -11.72280 -11.53788 -10.58302 -10.45769 -9.98996 -9.50513 -8.22173 -7.46609 -6.27674 0.56876 0.94750 1.36340 1.37898 1.50272 2.37079 2.56986 3.13711 3.23606 3.28221 3.89374 4.15584 4.20910 4.37658 4.42375 4.50592 4.66655 4.91258 5.00255 5.03517 5.13643 5.27954 5.29051 5.38695 5.43827 5.69809 5.82725 6.18886 6.46071 6.72836 6.77943 6.98125 7.22622 7.41322 7.71890 8.92155 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.008796 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.228631 B = 3182.533795 C = 3874.130670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 N -0.615 5.615 4 C 0.279 3.721 5 C -0.529 4.529 6 H 0.044 0.956 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.272 1.272 12 H -0.280 1.280 13 C 0.341 3.659 14 C -0.206 4.206 15 C -0.108 4.108 16 C 0.098 3.902 17 N -0.868 5.868 18 C 0.052 3.948 19 N -0.541 5.541 20 H 0.034 0.966 21 H 0.091 0.909 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.001 0.999 26 H 0.008 0.992 27 H 0.264 0.736 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.406 0.594 31 H 0.403 0.597 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 -3.724 15.774 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.001 4.001 3 N -0.329 5.329 4 C 0.157 3.843 5 C -0.569 4.569 6 H 0.063 0.937 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.206 1.206 13 C 0.106 3.894 14 C -0.232 4.232 15 C -0.138 4.138 16 C -0.009 4.009 17 N -0.413 5.413 18 C -0.110 4.110 19 N -0.258 5.258 20 H 0.053 0.947 21 H 0.109 0.891 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.019 0.981 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.166 0.834 29 H 0.179 0.821 30 H 0.235 0.765 31 H 0.232 0.768 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.770 -3.328 14.588 15.217 hybrid contribution 0.830 0.088 0.142 0.846 sum -1.940 -3.241 14.731 15.207 Atomic orbital electron populations 1.22130 0.95517 1.02788 1.01123 1.21438 0.94499 0.81620 1.02579 1.46800 1.69866 1.13333 1.02940 1.18505 0.93948 0.91824 0.80002 1.21805 0.98216 1.30883 1.05951 0.93721 1.25806 1.01983 0.94826 0.96548 1.70075 1.37479 1.34799 1.14814 0.85440 0.79631 0.77932 0.78198 1.19545 1.19689 1.20599 1.18612 0.95125 0.88643 0.87044 1.21440 1.09344 1.01607 0.90767 1.21062 1.01481 0.92601 0.98690 1.18534 1.00946 0.92959 0.88465 1.42010 1.81361 1.13865 1.04020 1.22171 1.02647 0.99998 0.86206 1.67063 1.17335 1.09267 1.32106 0.94683 0.89070 0.92816 0.91889 0.89352 0.98057 0.97436 0.92669 0.83382 0.82060 0.76459 0.76807 0.83098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 10.24 71.98 0.74 -3.94 16 2 C 0.12 4.33 5.97 86.38 0.52 4.84 16 3 N -0.62 -28.41 2.58 -708.02 -1.83 -30.24 16 4 C 0.28 15.88 5.23 85.63 0.45 16.32 16 5 C -0.53 -31.83 9.39 25.60 0.24 -31.59 16 6 H 0.04 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 9 Si 0.96 46.52 29.54 68.60 2.03 48.55 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 13 C 0.34 14.84 7.38 132.97 0.98 15.82 16 14 C -0.21 -6.81 9.27 22.48 0.21 -6.60 16 15 C -0.11 -2.94 10.04 22.57 0.23 -2.71 16 16 C 0.10 2.79 6.79 38.21 0.26 3.05 16 17 N -0.87 -16.11 9.11 -51.00 -0.46 -16.58 16 18 C 0.05 1.90 11.05 84.76 0.94 2.84 16 19 N -0.54 -25.24 9.07 -192.61 -1.75 -26.98 16 20 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 2.37 8.07 -2.39 -0.02 2.35 16 24 H 0.09 2.60 5.97 -2.39 -0.01 2.58 16 25 H 0.00 0.09 8.07 -2.39 -0.02 0.07 16 26 H 0.01 0.48 7.30 -2.38 -0.02 0.46 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.15 4.05 6.02 -2.91 -0.02 4.04 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.41 5.35 8.86 -92.71 -0.82 4.53 16 31 H 0.40 6.25 8.85 -92.71 -0.82 5.43 16 32 H 0.15 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -74.07 275.52 2.78 -71.29 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -0.51 Total: 12.90 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 5.01 Total: -1.13 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -3.75 Total: -131.61 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -74.07 2.78 -71.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.452 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds