Wall clock time and date at job start Sun Mar 29 2020 22:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47448 * 2 1 4 4 C 1.46506 * 119.99926 * 270.00399 * 3 2 1 5 5 C 1.50709 * 109.46853 * 269.99830 * 4 3 2 6 6 H 1.07997 * 119.99512 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99739 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00300 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99726 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46772 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46749 * 120.00110 * 9 7 5 12 12 H 1.48499 * 109.47132 * 240.00394 * 9 7 5 13 13 C 1.38539 * 120.00167 * 89.99605 * 3 2 1 14 14 C 1.39658 * 120.53050 * 5.00473 * 13 3 2 15 15 C 1.38075 * 118.33169 * 179.97438 * 14 13 3 16 16 C 1.50710 * 120.39902 * 179.72588 * 15 14 13 17 17 N 1.32573 * 119.20334 * 359.97438 * 15 14 13 18 18 C 1.31765 * 121.01267 * 359.97438 * 17 15 14 19 19 N 1.31772 * 121.83113 * 0.02562 * 18 17 15 20 20 H 1.08994 * 109.47390 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46871 * 300.00497 * 1 2 3 22 22 H 1.09000 * 109.46602 * 60.00148 * 1 2 3 23 23 H 1.09004 * 109.46613 * 239.99488 * 2 1 3 24 24 H 1.08999 * 109.47058 * 120.00473 * 2 1 3 25 25 H 1.08997 * 109.47245 * 29.99245 * 4 3 2 26 26 H 1.08999 * 109.47242 * 150.00132 * 4 3 2 27 27 H 0.97001 * 119.99875 * 179.97438 * 8 7 5 28 28 H 1.07998 * 120.83404 * 359.97438 * 14 13 3 29 29 H 1.08997 * 109.47002 * 90.00154 * 16 15 14 30 30 H 1.08996 * 109.47174 * 209.99989 * 16 15 14 31 31 H 1.09004 * 109.47014 * 329.99790 * 16 15 14 32 32 H 1.07995 * 119.08147 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7039 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3894 -2.8781 8 7 3.3489 3.1247 -3.6187 9 14 5.9136 2.0964 -3.4170 10 1 6.6012 1.2412 -2.4165 11 1 5.9215 1.4168 -4.7373 12 1 6.6206 3.3977 -3.5258 13 6 2.2493 2.0342 1.1998 14 6 2.1205 1.3553 2.4134 15 6 2.3618 2.0502 3.5818 16 6 2.2303 1.3650 4.9177 17 7 2.7057 3.3288 3.5147 18 6 2.8199 3.9411 2.3536 19 7 2.5992 3.3170 1.2142 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.5818 1.6876 -2.0284 26 1 2.0957 3.1410 -1.1384 27 1 3.6750 3.5151 -4.4446 28 1 1.8391 0.3129 2.4374 29 1 3.1886 0.9273 5.1974 30 1 1.9296 2.0928 5.6713 31 1 1.4777 0.5794 4.8506 32 1 3.1015 4.9835 2.3352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:14 Heat of formation + Delta-G solvation = 45.959700 kcal Electronic energy + Delta-G solvation = -14894.462203 eV Core-core repulsion = 12469.113145 eV Total energy + Delta-G solvation = -2425.349058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27701 -36.83113 -33.58395 -32.84641 -31.41293 -29.90709 -28.22748 -26.38317 -23.99460 -22.94364 -22.31256 -19.96034 -16.98590 -16.64307 -16.31384 -15.01639 -14.78269 -14.55019 -14.24334 -13.88960 -13.24998 -12.98552 -12.60290 -12.47157 -12.18850 -12.00894 -11.77182 -11.23274 -10.98295 -10.70203 -10.63468 -10.39619 -10.16611 -9.85227 -9.46506 -9.08737 -8.48373 -8.39704 -7.09235 -6.05229 -4.11539 1.67369 2.07027 3.27256 3.35039 3.38923 3.69389 4.40903 4.55172 4.64225 4.94754 5.20542 5.27736 5.40810 5.55674 5.60357 5.64319 5.69941 5.70950 5.95927 6.00296 6.14334 6.22279 6.27266 6.47875 6.80823 7.09661 7.42948 7.62349 7.83961 8.12493 8.21271 8.25671 8.90822 9.04201 9.53144 11.00946 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028693 B = 0.008522 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.598224 B = 3284.921661 C = 3770.316336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.573 5.573 4 C 0.250 3.750 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.451 3.549 14 C -0.313 4.313 15 C 0.188 3.812 16 C -0.099 4.099 17 N -0.587 5.587 18 C 0.334 3.666 19 N -0.562 5.562 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.263 0.737 28 H 0.132 0.868 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -5.289 10.779 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.281 5.281 4 C 0.131 3.869 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.206 3.794 14 C -0.342 4.342 15 C 0.046 3.954 16 C -0.156 4.156 17 N -0.309 5.309 18 C 0.043 3.957 19 N -0.286 5.286 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.018 -4.400 10.331 11.926 hybrid contribution 0.826 -0.929 -0.552 1.360 sum -3.192 -5.329 9.780 11.586 Atomic orbital electron populations 1.22208 0.96657 1.01433 1.02392 1.21412 0.93497 0.82981 1.02753 1.47204 1.64064 1.12233 1.04570 1.19378 0.96086 0.93954 0.77525 1.21468 0.96872 1.31824 1.06204 0.92637 1.24907 0.97748 0.94940 0.96347 1.69940 1.35521 1.33508 1.14312 0.86473 0.84741 0.78064 0.78327 1.19920 1.20958 1.20830 1.18597 0.86043 0.88282 0.86470 1.21878 1.17248 1.02241 0.92848 1.21144 0.89472 0.89881 0.94855 1.20655 1.02461 0.99763 0.92755 1.68173 1.22242 1.10372 1.30159 1.24548 0.89465 0.99560 0.82107 1.68116 1.20555 1.08748 1.31150 0.92057 0.92953 0.92097 0.89714 0.91524 0.95227 0.93015 0.92765 0.85050 0.90528 0.90624 0.90995 0.79778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.12 1.97 6.00 -4.04 -0.02 1.94 16 3 N -0.57 -12.27 2.56 -175.02 -0.45 -12.72 16 4 C 0.25 6.43 5.23 -5.19 -0.03 6.40 16 5 C -0.52 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.45 9.51 7.39 -154.78 -1.14 8.36 16 14 C -0.31 -5.47 9.00 -39.11 -0.35 -5.83 16 15 C 0.19 3.11 6.81 -82.33 -0.56 2.55 16 16 C -0.10 -1.15 10.21 36.01 0.37 -0.78 16 17 N -0.59 -10.60 10.37 -10.88 -0.11 -10.72 16 18 C 0.33 6.33 12.28 -92.20 -1.13 5.19 16 19 N -0.56 -12.49 9.23 -13.81 -0.13 -12.62 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 24 H 0.07 0.97 6.05 -51.93 -0.31 0.66 16 25 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 26 H 0.05 1.47 7.33 -51.93 -0.38 1.09 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.13 1.94 6.16 -52.49 -0.32 1.62 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.19 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 276.99 15.07 4.17 4.17 Total: -1.00 -31.60 276.99 -8.07 -39.67 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.36 Total: -1.52 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.91 Total: 2.48 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.05 Total: -61.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.60 -8.07 -39.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.633 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds