Wall clock time and date at job start Sun Mar 29 2020 22:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47448 * 2 1 4 4 C 1.46506 * 119.99926 * 270.00399 * 3 2 1 5 5 C 1.50709 * 109.46853 * 269.99830 * 4 3 2 6 6 H 1.07997 * 119.99512 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99739 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00300 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99726 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46772 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46749 * 120.00110 * 9 7 5 12 12 H 1.48499 * 109.47132 * 240.00394 * 9 7 5 13 13 C 1.38539 * 120.00167 * 89.99605 * 3 2 1 14 14 C 1.39658 * 120.53050 * 5.00473 * 13 3 2 15 15 C 1.38075 * 118.33169 * 179.97438 * 14 13 3 16 16 C 1.50710 * 120.39902 * 179.72588 * 15 14 13 17 17 N 1.32573 * 119.20334 * 359.97438 * 15 14 13 18 18 C 1.31765 * 121.01267 * 359.97438 * 17 15 14 19 19 N 1.31772 * 121.83113 * 0.02562 * 18 17 15 20 20 H 1.08994 * 109.47390 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46871 * 300.00497 * 1 2 3 22 22 H 1.09000 * 109.46602 * 60.00148 * 1 2 3 23 23 H 1.09004 * 109.46613 * 239.99488 * 2 1 3 24 24 H 1.08999 * 109.47058 * 120.00473 * 2 1 3 25 25 H 1.08997 * 109.47245 * 29.99245 * 4 3 2 26 26 H 1.08999 * 109.47242 * 150.00132 * 4 3 2 27 27 H 0.97001 * 119.99875 * 179.97438 * 8 7 5 28 28 H 1.07998 * 120.83404 * 359.97438 * 14 13 3 29 29 H 1.08997 * 109.47002 * 90.00154 * 16 15 14 30 30 H 1.08996 * 109.47174 * 209.99989 * 16 15 14 31 31 H 1.09004 * 109.47014 * 329.99790 * 16 15 14 32 32 H 1.07995 * 119.08147 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7039 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3894 -2.8781 8 7 3.3489 3.1247 -3.6187 9 14 5.9136 2.0964 -3.4170 10 1 6.6012 1.2412 -2.4165 11 1 5.9215 1.4168 -4.7373 12 1 6.6206 3.3977 -3.5258 13 6 2.2493 2.0342 1.1998 14 6 2.1205 1.3553 2.4134 15 6 2.3618 2.0502 3.5818 16 6 2.2303 1.3650 4.9177 17 7 2.7057 3.3288 3.5147 18 6 2.8199 3.9411 2.3536 19 7 2.5992 3.3170 1.2142 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.5818 1.6876 -2.0284 26 1 2.0957 3.1410 -1.1384 27 1 3.6750 3.5151 -4.4446 28 1 1.8391 0.3129 2.4374 29 1 3.1886 0.9273 5.1974 30 1 1.9296 2.0928 5.6713 31 1 1.4777 0.5794 4.8506 32 1 3.1015 4.9835 2.3352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:13 Heat of formation + Delta-G solvation = 27.674186 kcal Electronic energy + Delta-G solvation = -14895.255122 eV Core-core repulsion = 12469.113145 eV Total energy + Delta-G solvation = -2426.141977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72446 -38.37238 -34.94541 -34.93480 -32.74949 -31.56106 -29.54714 -28.11281 -25.41671 -24.81898 -23.65821 -21.45949 -18.74731 -18.29853 -18.03693 -16.61646 -16.35526 -16.11357 -15.63328 -15.39176 -14.78514 -14.39326 -13.98053 -13.77456 -13.56703 -13.31947 -13.11080 -12.99006 -12.71337 -12.55043 -12.22715 -11.98007 -11.95118 -11.38632 -11.28477 -10.63852 -10.51005 -9.91682 -8.74535 -8.15691 -6.35857 0.28571 0.60263 1.34832 1.36684 1.48165 2.16138 2.39268 3.07723 3.10899 3.40916 3.57217 3.88834 4.12408 4.32013 4.36396 4.51787 4.53958 4.76423 4.81502 4.84886 4.93749 5.02893 5.07184 5.14761 5.24302 5.34239 5.61368 5.72176 5.98623 6.09851 6.43267 6.72447 6.78298 7.33190 7.57012 8.84995 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028693 B = 0.008522 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.598224 B = 3284.921661 C = 3770.316336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 N -0.587 5.587 4 C 0.271 3.729 5 C -0.536 4.536 6 H 0.046 0.954 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.963 3.037 10 H -0.272 1.272 11 H -0.271 1.271 12 H -0.280 1.280 13 C 0.424 3.576 14 C -0.307 4.307 15 C 0.185 3.815 16 C -0.094 4.094 17 N -0.589 5.589 18 C 0.324 3.676 19 N -0.610 5.610 20 H 0.097 0.903 21 H 0.053 0.947 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.013 0.987 26 H 0.014 0.986 27 H 0.267 0.733 28 H 0.162 0.838 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 -6.927 12.537 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.010 4.010 3 N -0.296 5.296 4 C 0.150 3.850 5 C -0.575 4.575 6 H 0.064 0.936 7 C -0.187 4.187 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.196 1.196 12 H -0.205 1.205 13 C 0.181 3.819 14 C -0.336 4.336 15 C 0.043 3.957 16 C -0.151 4.151 17 N -0.311 5.311 18 C 0.035 3.965 19 N -0.335 5.335 20 H 0.116 0.884 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.180 0.820 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.658 -6.057 12.130 14.044 hybrid contribution 0.679 -0.397 -0.993 1.267 sum -2.979 -6.454 11.138 13.213 Atomic orbital electron populations 1.22118 0.94678 1.03415 1.01348 1.21672 0.95072 0.80704 1.03548 1.47113 1.65467 1.13734 1.03299 1.18743 0.94694 0.92207 0.79400 1.21681 0.97826 1.31673 1.06320 0.93608 1.25758 1.01976 0.94574 0.96393 1.70049 1.37489 1.34307 1.14790 0.85435 0.79489 0.78002 0.78255 1.19632 1.19590 1.20538 1.19013 0.86952 0.88525 0.87418 1.22143 1.16428 1.03486 0.91495 1.22012 0.87521 0.89354 0.96810 1.20794 1.04257 1.00284 0.89767 1.68301 1.22070 1.11399 1.29369 1.24995 0.89191 1.00540 0.81816 1.68072 1.22255 1.10170 1.33048 0.88439 0.92825 0.94268 0.90755 0.88778 0.96901 0.96753 0.92437 0.82044 0.88866 0.89843 0.88268 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 10.24 71.98 0.74 -3.49 16 2 C 0.11 3.65 6.00 86.38 0.52 4.17 16 3 N -0.59 -25.53 2.56 -707.64 -1.81 -27.34 16 4 C 0.27 14.57 5.23 85.63 0.45 15.02 16 5 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.69 5.46 84.65 0.46 1.15 16 8 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 9 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.42 17.90 7.39 133.18 0.98 18.89 16 14 C -0.31 -10.09 9.00 22.57 0.20 -9.89 16 15 C 0.18 5.62 6.81 42.41 0.29 5.91 16 16 C -0.09 -1.79 10.21 71.24 0.73 -1.06 16 17 N -0.59 -20.44 10.37 -188.35 -1.95 -22.40 16 18 C 0.32 12.31 12.28 180.90 2.22 14.53 16 19 N -0.61 -27.77 9.23 -197.61 -1.82 -29.60 16 20 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 21 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 2.53 8.07 -2.38 -0.02 2.51 16 24 H 0.09 2.49 6.05 -2.39 -0.01 2.48 16 25 H 0.01 0.72 8.07 -2.39 -0.02 0.71 16 26 H 0.01 0.87 7.33 -2.39 -0.02 0.85 16 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.16 4.17 6.16 -2.91 -0.02 4.15 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.39 8.09 -2.38 -0.02 1.37 16 32 H 0.21 6.44 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -70.15 276.99 4.65 -65.50 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.10 Total: 7.59 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 6.83 Total: 14.62 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -5.30 Total: -134.76 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.15 4.65 -65.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.170 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds