Wall clock time and date at job start Sun Mar 29 2020 22:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00460 * 2 1 4 4 H 1.08003 * 120.00012 * 202.71036 * 3 2 1 5 5 C 1.38810 * 119.99555 * 22.70998 * 3 2 1 6 6 N 1.31620 * 120.00190 * 11.51356 * 5 3 2 7 7 Si 1.86803 * 119.99694 * 191.50796 * 5 3 2 8 8 H 1.48495 * 109.46944 * 60.00189 * 7 5 3 9 9 H 1.48505 * 109.47238 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47211 * 300.00241 * 7 5 3 11 11 C 1.46498 * 119.99957 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47083 * 270.00166 * 11 2 1 13 13 O 1.42905 * 109.47036 * 64.99899 * 12 11 2 14 14 C 1.35903 * 116.99965 * 180.02562 * 13 12 11 15 15 C 1.38728 * 120.05714 * 180.02562 * 14 13 12 16 16 C 1.38146 * 119.94692 * 179.97438 * 15 14 13 17 17 C 1.38263 * 120.05213 * 0.02562 * 16 15 14 18 18 C 1.38268 * 120.11672 * 359.95457 * 17 16 15 19 19 C 1.38143 * 120.05185 * 0.05153 * 18 17 16 20 20 H 1.09000 * 109.47249 * 273.91672 * 1 2 3 21 21 H 1.09005 * 109.46589 * 33.91697 * 1 2 3 22 22 H 1.08998 * 109.47308 * 153.91198 * 1 2 3 23 23 H 0.97006 * 119.99817 * 180.02562 * 6 5 3 24 24 H 1.08999 * 109.47865 * 149.99830 * 11 2 1 25 25 H 1.09000 * 109.47118 * 29.99530 * 11 2 1 26 26 H 1.09000 * 109.47390 * 305.00061 * 12 11 2 27 27 H 1.09004 * 109.47433 * 184.99506 * 12 11 2 28 28 H 1.08000 * 120.02424 * 359.69769 * 15 14 13 29 29 H 1.08001 * 119.97398 * 180.02562 * 16 15 14 30 30 H 1.08008 * 119.94288 * 179.97438 * 17 16 15 31 31 H 1.07992 * 119.97505 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.02741 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1670 1.2221 -0.3611 5 6 1.5364 2.3414 0.4641 6 7 0.3919 2.2652 1.1096 7 14 2.3356 4.0045 0.1727 8 1 2.4787 4.2359 -1.2871 9 1 1.4876 5.0714 0.7626 10 1 3.6759 4.0284 0.8114 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7111 1.4417 13 8 1.2059 -1.9944 2.0805 14 6 1.2551 -2.4027 3.3758 15 6 0.0826 -2.6954 4.0571 16 6 0.1353 -3.1107 5.3736 17 6 1.3554 -3.2342 6.0124 18 6 2.5254 -2.9435 5.3355 19 6 2.4780 -2.5277 4.0189 20 1 -0.3634 0.0702 1.0253 21 1 -0.3633 0.8529 -0.5735 22 1 -0.3634 -0.9229 -0.4519 23 1 -0.0368 3.0728 1.4336 24 1 3.1499 -1.1383 -0.5143 25 1 1.6083 -2.0282 -0.5147 26 1 2.9641 -0.9140 1.9812 27 1 3.0731 -2.6071 1.4427 28 1 -0.8708 -2.5944 3.5601 29 1 -0.7771 -3.3391 5.9043 30 1 1.3945 -3.5587 7.0418 31 1 3.4771 -3.0412 5.8364 32 1 3.3922 -2.3004 3.4907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044292552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:25 Heat of formation + Delta-G solvation = 11.081797 kcal Electronic energy + Delta-G solvation = -14838.961936 eV Core-core repulsion = 12379.807708 eV Total energy + Delta-G solvation = -2459.154228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57207 -37.08559 -35.25194 -31.61431 -30.71342 -29.59847 -28.19198 -25.74586 -23.76629 -22.18100 -21.63848 -20.15918 -17.87835 -16.62291 -15.67604 -15.38221 -15.31397 -14.55045 -14.20074 -13.46223 -13.26620 -13.15228 -12.88146 -12.24691 -12.02907 -11.36417 -11.23398 -11.01541 -10.84651 -10.71504 -10.54875 -10.31504 -10.07148 -9.91129 -9.74256 -8.72722 -8.50693 -7.75605 -6.71462 -5.67520 -3.14813 1.62089 1.79516 3.39952 3.45370 3.46310 3.86622 4.11224 4.52556 5.10802 5.16657 5.36020 5.41644 5.49684 5.63282 5.75209 5.90673 5.91958 6.08009 6.11321 6.27832 6.47267 6.63627 6.67271 6.74715 6.77536 6.92285 7.12980 7.48967 7.80573 7.93097 8.04244 8.43748 9.27967 9.90916 10.41177 11.36703 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034393 B = 0.007208 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.924461 B = 3883.720772 C = 4041.059586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.902 5.902 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.151 3.849 12 C 0.037 3.963 13 O -0.293 6.293 14 C 0.149 3.851 15 C -0.159 4.159 16 C -0.083 4.083 17 C -0.176 4.176 18 C -0.083 4.083 19 C -0.215 4.215 20 H 0.032 0.968 21 H 0.040 0.960 22 H -0.005 1.005 23 H 0.252 0.748 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 -10.382 5.566 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.318 5.318 3 C -0.392 4.392 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.546 5.546 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.023 3.977 12 C -0.041 4.041 13 O -0.205 6.205 14 C 0.102 3.898 15 C -0.178 4.178 16 C -0.102 4.102 17 C -0.195 4.195 18 C -0.101 4.101 19 C -0.234 4.234 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.014 0.986 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.146 0.854 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.925 -10.184 5.468 11.718 hybrid contribution 0.702 1.048 0.167 1.273 sum 2.628 -9.136 5.635 11.051 Atomic orbital electron populations 1.20746 0.82110 0.95118 0.99433 1.43911 1.02199 1.00196 1.85542 1.19164 0.98261 0.85600 1.36170 0.91490 1.25051 0.97727 0.98494 0.98217 1.70088 1.18035 1.27118 1.39382 0.86356 0.78480 0.83918 0.77863 1.21037 1.21622 1.21026 1.20970 0.96995 0.89116 0.90627 1.23976 0.83877 0.97979 0.98241 1.86208 1.33756 1.79544 1.21017 1.19238 0.93689 0.91880 0.85025 1.20465 0.97006 1.05437 0.94872 1.20882 0.97743 0.97829 0.93697 1.20911 0.92665 1.05867 1.00009 1.20872 0.98109 0.97316 0.93793 1.21299 0.97288 1.07992 0.96776 0.94959 0.94148 0.98610 0.93734 0.91541 0.93403 0.91960 0.94207 0.85438 0.85958 0.86592 0.86438 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.42 8.61 59.85 0.52 4.94 16 2 N -0.60 -15.38 2.89 -181.12 -0.52 -15.90 16 3 C -0.26 -7.29 9.67 -15.06 -0.15 -7.44 16 4 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 5 C 0.00 0.11 5.12 -17.43 -0.09 0.02 16 6 N -0.90 -26.96 10.62 55.49 0.59 -26.37 16 7 Si 0.90 22.10 29.57 -169.99 -5.03 17.08 16 8 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.15 3.13 6.11 -4.04 -0.02 3.11 16 12 C 0.04 0.73 5.08 37.16 0.19 0.92 16 13 O -0.29 -6.17 9.69 -19.44 -0.19 -6.36 16 14 C 0.15 2.80 6.69 -39.22 -0.26 2.53 16 15 C -0.16 -2.69 9.99 -39.43 -0.39 -3.08 16 16 C -0.08 -1.18 10.04 -39.61 -0.40 -1.58 16 17 C -0.18 -2.38 10.04 -39.56 -0.40 -2.77 16 18 C -0.08 -1.18 10.04 -39.61 -0.40 -1.58 16 19 C -0.21 -3.57 9.04 -39.43 -0.36 -3.93 16 20 H 0.03 0.91 7.43 -51.93 -0.39 0.53 16 21 H 0.04 1.11 7.20 -51.93 -0.37 0.74 16 22 H 0.00 -0.11 7.85 -51.93 -0.41 -0.52 16 23 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 25 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 26 H 0.06 1.33 7.66 -51.93 -0.40 0.93 16 27 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 28 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.96 6.30 -52.49 -0.33 1.63 16 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -31.16 272.91 -7.15 -38.31 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.36 Total: -2.02 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.76 Total: -8.86 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.07 Total: -42.27 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.19 Total: -6.36 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.16 -7.15 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044292552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.396 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds