Wall clock time and date at job start Sun Mar 29 2020 22:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00460 * 2 1 4 4 H 1.08003 * 120.00012 * 202.71036 * 3 2 1 5 5 C 1.38810 * 119.99555 * 22.70998 * 3 2 1 6 6 N 1.31620 * 120.00190 * 11.51356 * 5 3 2 7 7 Si 1.86803 * 119.99694 * 191.50796 * 5 3 2 8 8 H 1.48495 * 109.46944 * 60.00189 * 7 5 3 9 9 H 1.48505 * 109.47238 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47211 * 300.00241 * 7 5 3 11 11 C 1.46498 * 119.99957 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47083 * 270.00166 * 11 2 1 13 13 O 1.42905 * 109.47036 * 64.99899 * 12 11 2 14 14 C 1.35903 * 116.99965 * 180.02562 * 13 12 11 15 15 C 1.38728 * 120.05714 * 180.02562 * 14 13 12 16 16 C 1.38146 * 119.94692 * 179.97438 * 15 14 13 17 17 C 1.38263 * 120.05213 * 0.02562 * 16 15 14 18 18 C 1.38268 * 120.11672 * 359.95457 * 17 16 15 19 19 C 1.38143 * 120.05185 * 0.05153 * 18 17 16 20 20 H 1.09000 * 109.47249 * 273.91672 * 1 2 3 21 21 H 1.09005 * 109.46589 * 33.91697 * 1 2 3 22 22 H 1.08998 * 109.47308 * 153.91198 * 1 2 3 23 23 H 0.97006 * 119.99817 * 180.02562 * 6 5 3 24 24 H 1.08999 * 109.47865 * 149.99830 * 11 2 1 25 25 H 1.09000 * 109.47118 * 29.99530 * 11 2 1 26 26 H 1.09000 * 109.47390 * 305.00061 * 12 11 2 27 27 H 1.09004 * 109.47433 * 184.99506 * 12 11 2 28 28 H 1.08000 * 120.02424 * 359.69769 * 15 14 13 29 29 H 1.08001 * 119.97398 * 180.02562 * 16 15 14 30 30 H 1.08008 * 119.94288 * 179.97438 * 17 16 15 31 31 H 1.07992 * 119.97505 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.02741 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1670 1.2221 -0.3611 5 6 1.5364 2.3414 0.4641 6 7 0.3919 2.2652 1.1096 7 14 2.3356 4.0045 0.1727 8 1 2.4787 4.2359 -1.2871 9 1 1.4876 5.0714 0.7626 10 1 3.6759 4.0284 0.8114 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7111 1.4417 13 8 1.2059 -1.9944 2.0805 14 6 1.2551 -2.4027 3.3758 15 6 0.0826 -2.6954 4.0571 16 6 0.1353 -3.1107 5.3736 17 6 1.3554 -3.2342 6.0124 18 6 2.5254 -2.9435 5.3355 19 6 2.4780 -2.5277 4.0189 20 1 -0.3634 0.0702 1.0253 21 1 -0.3633 0.8529 -0.5735 22 1 -0.3634 -0.9229 -0.4519 23 1 -0.0368 3.0728 1.4336 24 1 3.1499 -1.1383 -0.5143 25 1 1.6083 -2.0282 -0.5147 26 1 2.9641 -0.9140 1.9812 27 1 3.0731 -2.6071 1.4427 28 1 -0.8708 -2.5944 3.5601 29 1 -0.7771 -3.3391 5.9043 30 1 1.3945 -3.5587 7.0418 31 1 3.4771 -3.0412 5.8364 32 1 3.3922 -2.3004 3.4907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044292552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:25 Heat of formation + Delta-G solvation = -7.375047 kcal Electronic energy + Delta-G solvation = -14839.762285 eV Core-core repulsion = 12379.807708 eV Total energy + Delta-G solvation = -2459.954577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89616 -38.48388 -37.12408 -33.56423 -31.94643 -31.03266 -29.79047 -27.87083 -25.45180 -23.53285 -23.05846 -21.83198 -19.27535 -18.59681 -17.12940 -16.94190 -16.68216 -16.33466 -15.47018 -15.27220 -14.98503 -14.65996 -14.27417 -13.90042 -13.46666 -13.07323 -12.86143 -12.72916 -12.57251 -12.39401 -12.15460 -12.04042 -12.00931 -11.58498 -11.53031 -10.63463 -9.90592 -9.05230 -8.79602 -7.81323 -5.30869 0.44041 0.58203 1.45436 1.48349 1.54889 2.45756 2.53433 2.91337 3.31766 3.67832 3.95445 4.03755 4.29858 4.31163 4.41357 4.48063 4.55452 4.60301 4.72243 4.88104 4.96236 5.05488 5.13579 5.33169 5.46997 5.53253 5.62319 5.63241 5.77428 5.98084 6.32228 6.65193 7.14837 7.86590 8.32748 9.22112 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034393 B = 0.007208 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.924461 B = 3883.720772 C = 4041.059586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.613 5.613 3 C -0.268 4.268 4 H 0.078 0.922 5 C -0.056 4.056 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.275 1.275 9 H -0.297 1.297 10 H -0.275 1.275 11 C 0.145 3.855 12 C 0.048 3.952 13 O -0.324 6.324 14 C 0.109 3.891 15 C -0.181 4.181 16 C -0.081 4.081 17 C -0.168 4.168 18 C -0.084 4.084 19 C -0.228 4.228 20 H -0.001 1.001 21 H 0.014 0.986 22 H 0.022 0.978 23 H 0.246 0.754 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 -11.434 6.627 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.336 5.336 3 C -0.398 4.398 4 H 0.095 0.905 5 C -0.251 4.251 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.201 1.201 9 H -0.224 1.224 10 H -0.200 1.200 11 C 0.019 3.981 12 C -0.030 4.030 13 O -0.238 6.238 14 C 0.063 3.937 15 C -0.200 4.200 16 C -0.099 4.099 17 C -0.186 4.186 18 C -0.102 4.102 19 C -0.246 4.246 20 H 0.017 0.983 21 H 0.033 0.967 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.299 -11.275 6.523 13.437 hybrid contribution 0.293 1.241 -0.087 1.278 sum 3.592 -10.034 6.437 12.450 Atomic orbital electron populations 1.20406 0.82875 0.95162 0.97158 1.44132 1.02164 1.01568 1.85760 1.19589 0.98613 0.86573 1.34995 0.90472 1.25877 0.98511 1.02116 0.98606 1.70289 1.19690 1.27395 1.41050 0.85294 0.77585 0.79305 0.77957 1.20114 1.22355 1.20040 1.21212 0.97669 0.87387 0.91855 1.23712 0.83976 0.98675 0.96628 1.86135 1.34390 1.80604 1.22635 1.19608 0.95319 0.94124 0.84617 1.20693 0.96381 1.06614 0.96334 1.21289 0.99687 0.96398 0.92515 1.21409 0.91854 1.03827 1.01518 1.21301 1.00060 0.95987 0.92831 1.21474 0.96566 1.08547 0.98062 0.98256 0.96717 0.95964 0.94513 0.89544 0.91748 0.94562 0.90571 0.86154 0.82835 0.82857 0.83299 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.07 8.61 127.77 1.10 11.17 16 2 N -0.61 -31.84 2.89 -726.94 -2.10 -33.94 16 3 C -0.27 -14.91 9.67 84.03 0.81 -14.10 16 4 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 5 C -0.06 -3.23 5.12 84.86 0.43 -2.79 16 6 N -0.94 -57.81 10.62 21.65 0.23 -57.58 16 7 Si 0.97 45.88 29.57 68.60 2.03 47.91 16 8 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 C 0.15 5.89 6.11 86.38 0.53 6.42 16 12 C 0.05 1.84 5.08 71.98 0.37 2.21 16 13 O -0.32 -13.93 9.69 -92.46 -0.90 -14.83 16 14 C 0.11 4.14 6.69 22.51 0.15 4.29 16 15 C -0.18 -6.15 9.99 22.37 0.22 -5.93 16 16 C -0.08 -2.12 10.04 22.25 0.22 -1.89 16 17 C -0.17 -3.95 10.04 22.28 0.22 -3.72 16 18 C -0.08 -2.16 10.04 22.25 0.22 -1.94 16 19 C -0.23 -7.38 9.04 22.37 0.20 -7.18 16 20 H 0.00 -0.05 7.43 -2.39 -0.02 -0.07 16 21 H 0.01 0.81 7.20 -2.38 -0.02 0.80 16 22 H 0.02 1.03 7.85 -2.39 -0.02 1.01 16 23 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 24 H 0.09 3.12 8.03 -2.39 -0.02 3.10 16 25 H 0.06 2.39 7.87 -2.39 -0.02 2.37 16 26 H 0.04 1.56 7.66 -2.39 -0.02 1.55 16 27 H 0.08 2.35 7.66 -2.38 -0.02 2.33 16 28 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 29 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 Total: -1.00 -68.56 272.91 4.84 -63.72 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.09 Total: 8.17 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 4.49 Total: -13.46 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -1.87 Total: -91.52 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.90 Total: -14.83 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -68.56 4.84 -63.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044292552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.349 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds