Wall clock time and date at job start Sun Mar 29 2020 22:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 117.00194 * 2 1 4 4 C 1.38758 * 120.05289 * 359.73335 * 3 2 1 5 5 C 1.38128 * 119.93693 * 179.69288 * 4 3 2 6 6 C 1.38281 * 120.05796 * 0.59953 * 5 4 3 7 7 C 1.38240 * 120.11468 * 359.67334 * 6 5 4 8 8 C 1.50700 * 119.97678 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47142 * 269.98091 * 8 7 6 10 10 C 1.46495 * 120.00007 * 269.99513 * 9 8 7 11 11 C 1.36935 * 119.99921 * 89.99945 * 9 8 7 12 12 H 1.08006 * 119.99852 * 22.37161 * 11 9 8 13 13 C 1.38814 * 120.00171 * 202.36875 * 11 9 8 14 14 N 1.31620 * 119.99447 * 11.34221 * 13 11 9 15 15 Si 1.86794 * 120.00360 * 191.33555 * 13 11 9 16 16 H 1.48502 * 109.47203 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47153 * 120.00125 * 15 13 11 18 18 H 1.48496 * 109.47429 * 240.00636 * 15 13 11 19 19 C 1.38166 * 120.05614 * 0.02795 * 7 6 5 20 20 H 1.08997 * 109.47184 * 59.99411 * 1 2 3 21 21 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46932 * 299.99734 * 1 2 3 23 23 H 1.07993 * 120.02994 * 359.97186 * 4 3 2 24 24 H 1.08003 * 119.96826 * 180.29478 * 5 4 3 25 25 H 1.08002 * 119.94347 * 179.69983 * 6 5 4 26 26 H 1.08998 * 109.46733 * 29.97976 * 8 7 6 27 27 H 1.09005 * 109.47247 * 149.98170 * 8 7 6 28 28 H 1.09000 * 109.47037 * 94.20541 * 10 9 8 29 29 H 1.08997 * 109.47526 * 214.20445 * 10 9 8 30 30 H 1.08998 * 109.47295 * 334.20716 * 10 9 8 31 31 H 0.97000 * 119.99380 * 179.97438 * 14 13 11 32 32 H 1.07999 * 120.03574 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9210 3.6047 0.0008 6 6 3.3020 3.6757 0.0003 7 6 4.0561 2.5171 0.0002 8 6 5.5609 2.5980 0.0002 9 7 6.0485 2.6240 -1.3810 10 6 6.3606 1.3701 -2.0713 11 6 6.2127 3.8203 -2.0268 12 1 6.3400 4.7287 -1.4566 13 6 6.2156 3.8655 -3.4142 14 7 5.8415 2.8112 -4.1077 15 14 6.7501 5.4225 -4.2969 16 1 7.1204 6.4561 -3.2970 17 1 7.9226 5.1254 -5.1584 18 1 5.6329 5.9237 -5.1370 19 6 3.4312 1.2848 0.0000 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2129 2.3203 -0.0104 24 1 1.3341 4.5114 0.0013 25 1 3.7923 4.6380 0.0004 26 1 5.8758 3.5064 0.5138 27 1 5.9715 1.7289 0.5142 28 1 5.4928 1.0458 -2.6457 29 1 7.2040 1.5258 -2.7440 30 1 6.6172 0.6057 -1.3379 31 1 5.8431 2.8429 -5.0771 32 1 4.0207 0.3798 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044296887.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:40 Heat of formation + Delta-G solvation = 11.060152 kcal Electronic energy + Delta-G solvation = -14892.327475 eV Core-core repulsion = 12433.172308 eV Total energy + Delta-G solvation = -2459.155167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60836 -37.27951 -35.20143 -31.83716 -30.23729 -29.58556 -27.04968 -26.01631 -25.40049 -21.95560 -21.66647 -20.11780 -17.29342 -16.67675 -15.75416 -15.43947 -15.35487 -14.79751 -13.85031 -13.61414 -13.43617 -13.01610 -12.76997 -12.15075 -12.03067 -11.48883 -11.24881 -10.93625 -10.78323 -10.69239 -10.62630 -10.43921 -10.12299 -9.94299 -9.86284 -8.54833 -8.20028 -7.63072 -6.76168 -5.71747 -3.15962 1.96114 2.08125 3.38405 3.45163 3.47279 3.61790 4.35770 4.54968 5.14091 5.26798 5.34772 5.40081 5.46371 5.55993 5.75618 5.78920 5.97836 6.01849 6.17423 6.36945 6.58682 6.71054 6.80412 6.85634 7.03401 7.32549 7.41603 7.44234 7.76824 7.83477 7.88461 8.39849 9.23721 9.86067 10.35322 11.32832 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035250 B = 0.007711 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.134040 B = 3630.355851 C = 3753.170361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.323 6.323 3 C 0.116 3.884 4 C -0.227 4.227 5 C -0.088 4.088 6 C -0.136 4.136 7 C -0.041 4.041 8 C 0.179 3.821 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.251 4.251 12 H 0.071 0.929 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.905 3.095 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.291 1.291 19 C -0.144 4.144 20 H 0.051 0.949 21 H 0.093 0.907 22 H 0.050 0.950 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.047 0.953 30 H -0.002 1.002 31 H 0.252 0.748 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 -2.438 8.413 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.237 6.237 3 C 0.072 3.928 4 C -0.246 4.246 5 C -0.106 4.106 6 C -0.155 4.155 7 C -0.045 4.045 8 C 0.052 3.948 9 N -0.310 5.310 10 C 0.018 3.982 11 C -0.381 4.381 12 H 0.089 0.911 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.735 3.265 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.218 1.218 19 C -0.163 4.163 20 H 0.070 0.930 21 H 0.111 0.889 22 H 0.068 0.932 23 H 0.134 0.866 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.781 -2.662 8.199 11.613 hybrid contribution -0.336 0.958 -0.876 1.341 sum -8.117 -1.704 7.323 11.064 Atomic orbital electron populations 1.22927 0.79398 1.03102 1.00987 1.86036 1.20604 1.27720 1.89353 1.18991 0.92391 0.83582 0.97837 1.20958 0.98971 0.92655 1.12028 1.20817 0.94849 0.96348 0.98596 1.20897 0.93108 0.98478 1.03028 1.21014 0.99350 0.91462 0.92693 1.20022 0.86638 0.99798 0.88379 1.44146 1.72708 1.03948 1.10229 1.20837 0.99707 0.84556 0.93076 1.19281 1.43045 0.86713 0.89049 0.91147 1.25087 1.00336 0.97350 0.96912 1.70094 1.50345 1.28729 1.05609 0.86170 0.77880 0.82755 0.79680 1.20239 1.21593 1.21755 1.20225 0.90670 0.98371 1.07082 0.93014 0.88889 0.93154 0.86644 0.86799 0.86359 0.92550 0.93242 0.95277 0.93442 0.98330 0.93771 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.43 10.50 -19.42 -0.20 -5.64 16 3 C 0.12 2.16 6.69 -39.21 -0.26 1.90 16 4 C -0.23 -3.86 9.04 -39.43 -0.36 -4.21 16 5 C -0.09 -1.53 10.04 -39.61 -0.40 -1.93 16 6 C -0.14 -2.66 9.70 -39.56 -0.38 -3.05 16 7 C -0.04 -0.85 5.46 -104.65 -0.57 -1.42 16 8 C 0.18 3.78 5.83 -5.19 -0.03 3.75 16 9 N -0.59 -15.06 2.91 -182.50 -0.53 -15.60 16 10 C 0.16 4.12 9.01 59.84 0.54 4.66 16 11 C -0.25 -6.92 9.67 -15.06 -0.15 -7.06 16 12 H 0.07 1.88 7.84 -52.48 -0.41 1.47 16 13 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 14 N -0.90 -26.77 10.59 55.49 0.59 -26.19 16 15 Si 0.91 22.01 29.57 -169.99 -5.03 16.98 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 C -0.14 -2.88 9.64 -39.43 -0.38 -3.26 16 20 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 21 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 23 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 24 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 25 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 26 H 0.06 1.13 7.97 -51.93 -0.41 0.71 16 27 H 0.05 0.94 7.81 -51.93 -0.41 0.54 16 28 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 29 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 30 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 273.23 15.07 4.12 4.12 Total: -1.00 -31.20 273.23 -6.49 -37.69 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.35 Total: -2.06 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.09 Total: -9.31 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.06 Total: -41.78 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.20 Total: -5.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.20 -6.49 -37.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044296887.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.754 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds