Wall clock time and date at job start Sun Mar 29 2020 22:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 117.00194 * 2 1 4 4 C 1.38758 * 120.05289 * 359.73335 * 3 2 1 5 5 C 1.38128 * 119.93693 * 179.69288 * 4 3 2 6 6 C 1.38281 * 120.05796 * 0.59953 * 5 4 3 7 7 C 1.38240 * 120.11468 * 359.67334 * 6 5 4 8 8 C 1.50700 * 119.97678 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47142 * 269.98091 * 8 7 6 10 10 C 1.46495 * 120.00007 * 269.99513 * 9 8 7 11 11 C 1.36935 * 119.99921 * 89.99945 * 9 8 7 12 12 H 1.08006 * 119.99852 * 22.37161 * 11 9 8 13 13 C 1.38814 * 120.00171 * 202.36875 * 11 9 8 14 14 N 1.31620 * 119.99447 * 11.34221 * 13 11 9 15 15 Si 1.86794 * 120.00360 * 191.33555 * 13 11 9 16 16 H 1.48502 * 109.47203 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47153 * 120.00125 * 15 13 11 18 18 H 1.48496 * 109.47429 * 240.00636 * 15 13 11 19 19 C 1.38166 * 120.05614 * 0.02795 * 7 6 5 20 20 H 1.08997 * 109.47184 * 59.99411 * 1 2 3 21 21 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46932 * 299.99734 * 1 2 3 23 23 H 1.07993 * 120.02994 * 359.97186 * 4 3 2 24 24 H 1.08003 * 119.96826 * 180.29478 * 5 4 3 25 25 H 1.08002 * 119.94347 * 179.69983 * 6 5 4 26 26 H 1.08998 * 109.46733 * 29.97976 * 8 7 6 27 27 H 1.09005 * 109.47247 * 149.98170 * 8 7 6 28 28 H 1.09000 * 109.47037 * 94.20541 * 10 9 8 29 29 H 1.08997 * 109.47526 * 214.20445 * 10 9 8 30 30 H 1.08998 * 109.47295 * 334.20716 * 10 9 8 31 31 H 0.97000 * 119.99380 * 179.97438 * 14 13 11 32 32 H 1.07999 * 120.03574 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9210 3.6047 0.0008 6 6 3.3020 3.6757 0.0003 7 6 4.0561 2.5171 0.0002 8 6 5.5609 2.5980 0.0002 9 7 6.0485 2.6240 -1.3810 10 6 6.3606 1.3701 -2.0713 11 6 6.2127 3.8203 -2.0268 12 1 6.3400 4.7287 -1.4566 13 6 6.2156 3.8655 -3.4142 14 7 5.8415 2.8112 -4.1077 15 14 6.7501 5.4225 -4.2969 16 1 7.1204 6.4561 -3.2970 17 1 7.9226 5.1254 -5.1584 18 1 5.6329 5.9237 -5.1370 19 6 3.4312 1.2848 0.0000 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2129 2.3203 -0.0104 24 1 1.3341 4.5114 0.0013 25 1 3.7923 4.6380 0.0004 26 1 5.8758 3.5064 0.5138 27 1 5.9715 1.7289 0.5142 28 1 5.4928 1.0458 -2.6457 29 1 7.2040 1.5258 -2.7440 30 1 6.6172 0.6057 -1.3379 31 1 5.8431 2.8429 -5.0771 32 1 4.0207 0.3798 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044296887.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:40 Heat of formation + Delta-G solvation = -7.540182 kcal Electronic energy + Delta-G solvation = -14893.134046 eV Core-core repulsion = 12433.172308 eV Total energy + Delta-G solvation = -2459.961738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95278 -38.72387 -37.02247 -33.68669 -31.83845 -31.09260 -28.17618 -27.99528 -27.14335 -23.56867 -23.30930 -21.66083 -18.80697 -18.55124 -17.07660 -16.80920 -16.76566 -16.56323 -15.50632 -15.40605 -15.02045 -14.63069 -14.30030 -13.68566 -13.41679 -13.10166 -12.82564 -12.76837 -12.55359 -12.35386 -12.21918 -11.98136 -11.88794 -11.76250 -11.61242 -10.64931 -9.68251 -9.04909 -8.79647 -7.81707 -5.29327 0.51568 0.63286 1.46727 1.47668 1.58201 2.44621 2.51536 2.92672 3.34791 3.87513 3.96961 4.05861 4.28667 4.36955 4.41399 4.49283 4.58252 4.67715 4.73091 4.82950 4.92600 4.99904 5.22720 5.31953 5.43310 5.59457 5.63252 5.71928 5.89367 5.97426 6.32890 6.56882 7.14973 7.85299 8.30343 9.22245 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035250 B = 0.007711 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.134040 B = 3630.355851 C = 3753.170361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.111 3.889 4 C -0.221 4.221 5 C -0.086 4.086 6 C -0.156 4.156 7 C -0.059 4.059 8 C 0.178 3.822 9 N -0.606 5.606 10 C 0.179 3.821 11 C -0.254 4.254 12 H 0.076 0.924 13 C -0.056 4.056 14 N -0.940 5.940 15 Si 0.969 3.031 16 H -0.262 1.262 17 H -0.292 1.292 18 H -0.295 1.295 19 C -0.166 4.166 20 H 0.057 0.943 21 H 0.120 0.880 22 H 0.068 0.932 23 H 0.151 0.849 24 H 0.147 0.853 25 H 0.118 0.882 26 H 0.065 0.935 27 H 0.067 0.933 28 H -0.003 1.003 29 H 0.022 0.978 30 H 0.029 0.971 31 H 0.246 0.754 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 -1.789 9.427 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.066 3.934 4 C -0.240 4.240 5 C -0.104 4.104 6 C -0.175 4.175 7 C -0.062 4.062 8 C 0.052 3.948 9 N -0.328 5.328 10 C 0.034 3.966 11 C -0.385 4.385 12 H 0.094 0.906 13 C -0.250 4.250 14 N -0.586 5.586 15 Si 0.797 3.203 16 H -0.187 1.187 17 H -0.219 1.219 18 H -0.222 1.222 19 C -0.185 4.185 20 H 0.076 0.924 21 H 0.138 0.862 22 H 0.087 0.913 23 H 0.168 0.832 24 H 0.164 0.836 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.016 0.984 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.334 -2.009 9.266 13.305 hybrid contribution 0.007 0.671 -1.049 1.245 sum -9.327 -1.338 8.217 12.502 Atomic orbital electron populations 1.23313 0.76607 1.05426 1.02098 1.86018 1.23482 1.26994 1.89038 1.19119 0.92185 0.84892 0.97180 1.21366 1.00744 0.91795 1.10102 1.21199 0.94207 0.97975 0.97030 1.21074 0.94425 0.98094 1.03955 1.20894 0.98843 0.92305 0.94189 1.20118 0.87462 1.01031 0.86160 1.44285 1.73886 1.03273 1.11353 1.20540 0.97309 0.85562 0.93195 1.19604 1.41897 0.87543 0.89411 0.90616 1.25843 1.01196 1.00231 0.97759 1.70276 1.52379 1.30720 1.05261 0.85166 0.76934 0.79679 0.78477 1.18651 1.21857 1.22240 1.20325 0.91953 0.98052 1.08211 0.92443 0.86220 0.91308 0.83184 0.83569 0.86401 0.91638 0.91519 0.98441 0.95955 0.95216 0.94473 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.34 -10.82 10.50 -92.39 -0.97 -11.79 16 3 C 0.11 3.95 6.69 22.51 0.15 4.10 16 4 C -0.22 -6.88 9.04 22.37 0.20 -6.67 16 5 C -0.09 -2.78 10.04 22.25 0.22 -2.56 16 6 C -0.16 -5.96 9.70 22.28 0.22 -5.74 16 7 C -0.06 -2.42 5.46 -19.88 -0.11 -2.52 16 8 C 0.18 7.46 5.83 85.63 0.50 7.96 16 9 N -0.61 -31.15 2.91 -731.32 -2.13 -33.27 16 10 C 0.18 9.24 9.01 127.77 1.15 10.39 16 11 C -0.25 -14.04 9.67 84.03 0.81 -13.23 16 12 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 13 C -0.06 -3.16 5.13 84.86 0.44 -2.73 16 14 N -0.94 -57.08 10.59 21.65 0.23 -56.85 16 15 Si 0.97 45.61 29.57 68.60 2.03 47.64 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 18 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 19 C -0.17 -6.58 9.64 22.37 0.22 -6.37 16 20 H 0.06 1.10 7.65 -2.39 -0.02 1.08 16 21 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.07 1.14 7.67 -2.39 -0.02 1.13 16 23 H 0.15 3.54 6.30 -2.91 -0.02 3.53 16 24 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 25 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 26 H 0.07 2.58 7.97 -2.39 -0.02 2.56 16 27 H 0.07 2.50 7.81 -2.38 -0.02 2.48 16 28 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 29 H 0.02 1.22 7.19 -2.39 -0.02 1.20 16 30 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 31 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -67.32 273.23 5.16 -62.15 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.09 Total: 7.98 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.91 Total: -15.86 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -1.90 Total: -90.12 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.97 Total: -11.79 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -67.32 5.16 -62.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044296887.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.613 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds