Wall clock time and date at job start Sun Mar 29 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36934 * 120.00273 * 2 1 4 4 H 1.08000 * 120.00215 * 154.60849 * 3 2 1 5 5 C 1.38815 * 119.99909 * 334.61284 * 3 2 1 6 6 N 1.31622 * 119.99508 * 3.91833 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 183.91547 * 5 3 2 8 8 H 1.48500 * 109.47109 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46967 * 119.99833 * 7 5 3 10 10 H 1.48495 * 109.47304 * 239.99984 * 7 5 3 11 11 C 1.46508 * 120.00091 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46887 * 89.99813 * 11 2 1 13 13 H 1.08997 * 109.47164 * 305.00137 * 12 11 2 14 14 O 1.42900 * 109.46858 * 65.00389 * 12 11 2 15 15 C 1.50698 * 109.46800 * 185.00121 * 12 11 2 16 16 C 1.38231 * 120.00127 * 279.72509 * 15 12 11 17 17 C 1.38241 * 119.99967 * 179.78824 * 16 15 12 18 18 C 1.38235 * 119.99920 * 0.44942 * 17 16 15 19 19 C 1.38230 * 119.99647 * 359.80709 * 18 17 16 20 20 C 1.38236 * 119.99720 * 100.00606 * 15 12 11 21 21 H 1.08998 * 109.47148 * 84.47093 * 1 2 3 22 22 H 1.09004 * 109.47258 * 204.46862 * 1 2 3 23 23 H 1.09006 * 109.47120 * 324.46510 * 1 2 3 24 24 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.47455 * 210.00315 * 11 2 1 26 26 H 1.09000 * 109.47209 * 330.00434 * 11 2 1 27 27 H 0.96701 * 114.00345 * 59.99720 * 14 12 11 28 28 H 1.08002 * 120.00385 * 0.02562 * 16 15 12 29 29 H 1.08003 * 119.99719 * 180.27397 * 17 16 15 30 30 H 1.07997 * 119.99758 * 179.83593 * 18 17 16 31 31 H 1.08002 * 119.99672 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.00489 * 359.97438 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1514 1.2310 0.4011 5 6 1.5561 2.3300 -0.5154 6 7 0.3085 2.2930 -0.9331 7 14 2.5281 3.9220 -0.6160 8 1 3.8976 3.7002 -0.0866 9 1 2.6106 4.3629 -2.0317 10 1 1.8489 4.9684 0.1895 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 1 1.5061 -1.7558 -1.9807 14 8 3.3209 -0.7734 -2.0810 15 6 3.0961 -3.0737 -1.4429 16 6 4.4525 -3.1975 -1.2073 17 6 5.0422 -4.4478 -1.2041 18 6 4.2771 -5.5735 -1.4456 19 6 2.9216 -5.4491 -1.6865 20 6 2.3311 -4.1992 -1.6854 21 1 -0.3633 0.0990 -1.0229 22 1 -0.3634 -0.9354 0.4257 23 1 -0.3634 0.8363 0.5973 24 1 -0.1061 3.0924 -1.2937 25 1 3.1499 -1.1383 0.5144 26 1 1.6084 -2.0282 0.5147 27 1 4.1836 -0.6818 -1.6539 28 1 5.0510 -2.3178 -1.0220 29 1 6.1012 -4.5449 -1.0156 30 1 4.7382 -6.5500 -1.4457 31 1 2.3237 -6.3286 -1.8748 32 1 1.2721 -4.1022 -1.8736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045059948.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:00 Heat of formation + Delta-G solvation = 0.148070 kcal Electronic energy + Delta-G solvation = -14921.213173 eV Core-core repulsion = 12461.584823 eV Total energy + Delta-G solvation = -2459.628350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.30938 -36.68985 -34.66251 -31.62817 -30.78797 -30.64527 -27.35455 -25.82317 -23.70040 -22.38058 -21.14935 -20.21943 -17.26618 -16.66496 -15.60170 -15.19697 -14.89266 -14.51108 -13.73275 -13.68604 -13.33104 -13.12117 -12.73125 -12.42804 -11.87407 -11.41237 -11.11420 -10.97578 -10.82767 -10.61800 -10.44800 -10.22988 -9.97882 -9.84544 -9.34155 -8.76768 -8.55548 -8.39616 -6.65446 -5.66315 -3.10569 1.53027 1.55476 3.43372 3.49778 3.51522 3.95147 4.55537 4.98787 5.03243 5.11233 5.22042 5.27355 5.52743 5.65795 5.69694 5.83278 5.90299 6.15820 6.17622 6.19233 6.45458 6.60122 6.63622 6.67589 6.82240 7.00994 7.16862 7.51082 7.80496 7.89787 8.39529 8.49683 9.32178 9.92129 10.41755 11.39501 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047777 B = 0.007154 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.909928 B = 3913.121119 C = 4262.110486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.242 4.242 4 H 0.067 0.933 5 C 0.006 3.994 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.292 1.292 11 C 0.130 3.870 12 C 0.120 3.880 13 H 0.096 0.904 14 O -0.535 6.535 15 C -0.099 4.099 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.116 4.116 21 H 0.025 0.975 22 H -0.009 1.009 23 H 0.054 0.946 24 H 0.251 0.749 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.360 0.640 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.993 -13.058 -0.020 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.371 4.371 4 H 0.084 0.916 5 C -0.191 4.191 6 N -0.556 5.556 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.220 1.220 11 C 0.002 3.998 12 C 0.057 3.943 13 H 0.114 0.886 14 O -0.338 6.338 15 C -0.100 4.100 16 C -0.134 4.134 17 C -0.137 4.137 18 C -0.153 4.153 19 C -0.139 4.139 20 C -0.134 4.134 21 H 0.044 0.956 22 H 0.009 0.991 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.206 0.794 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.336 -12.812 -0.456 13.886 hybrid contribution 0.923 0.722 0.118 1.178 sum 6.260 -12.090 -0.338 13.619 Atomic orbital electron populations 1.20909 0.82261 0.95364 0.99436 1.43907 1.01960 1.00423 1.85437 1.19124 0.99058 0.85989 1.32971 0.91563 1.25130 0.96558 0.98771 0.98681 1.70084 1.11387 1.27755 1.46386 0.86192 0.79459 0.83580 0.77352 1.20443 1.21631 1.21963 1.21524 0.96573 0.89055 0.92683 1.21869 0.92375 0.82044 0.98014 0.88579 1.86690 1.28488 1.63008 1.55626 1.21085 0.94330 0.97489 0.97090 1.20930 0.94634 0.97423 1.00441 1.21078 0.99546 0.92698 1.00414 1.21047 0.94290 0.98281 1.01719 1.21095 0.95057 0.97223 1.00487 1.21045 0.99924 0.92140 1.00330 0.95629 0.99101 0.92729 0.93898 0.93515 0.93709 0.79403 0.86257 0.86445 0.86627 0.86458 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 8.99 59.84 0.54 4.71 16 2 N -0.60 -15.20 2.91 -181.12 -0.53 -15.73 16 3 C -0.24 -6.70 9.17 -15.06 -0.14 -6.84 16 4 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 5 C 0.01 0.18 5.38 -17.43 -0.09 0.08 16 6 N -0.91 -27.09 10.13 55.49 0.56 -26.53 16 7 Si 0.90 22.36 29.56 -169.99 -5.02 17.33 16 8 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 C 0.13 2.69 5.37 -4.04 -0.02 2.67 16 12 C 0.12 2.30 3.45 -27.88 -0.10 2.21 16 13 H 0.10 2.02 8.00 -51.93 -0.42 1.60 16 14 O -0.53 -11.24 12.66 -35.23 -0.45 -11.68 16 15 C -0.10 -1.58 4.97 -104.63 -0.52 -2.10 16 16 C -0.12 -1.66 9.32 -39.58 -0.37 -2.03 16 17 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 18 C -0.14 -1.61 10.05 -39.59 -0.40 -2.01 16 19 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 20 C -0.12 -1.68 9.67 -39.58 -0.38 -2.06 16 21 H 0.03 0.70 7.43 -51.93 -0.39 0.31 16 22 H -0.01 -0.21 7.83 -51.93 -0.41 -0.62 16 23 H 0.05 1.49 7.04 -51.93 -0.37 1.13 16 24 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 26 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 27 H 0.36 6.31 7.50 45.56 0.34 6.65 16 28 H 0.12 1.56 6.78 -52.49 -0.36 1.20 16 29 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.62 8.04 -52.49 -0.42 1.20 16 LS Contribution 271.87 15.07 4.10 4.10 Total: -1.00 -31.53 271.87 -7.26 -38.79 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.65 Total: 2.88 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.28 Total: -9.16 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.03 Total: -42.25 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.45 Total: -11.68 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.53 -7.26 -38.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045059948.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.940 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds