Wall clock time and date at job start Sun Mar 29 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36934 * 120.00273 * 2 1 4 4 H 1.08000 * 120.00215 * 154.60849 * 3 2 1 5 5 C 1.38815 * 119.99909 * 334.61284 * 3 2 1 6 6 N 1.31622 * 119.99508 * 3.91833 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 183.91547 * 5 3 2 8 8 H 1.48500 * 109.47109 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46967 * 119.99833 * 7 5 3 10 10 H 1.48495 * 109.47304 * 239.99984 * 7 5 3 11 11 C 1.46508 * 120.00091 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46887 * 89.99813 * 11 2 1 13 13 H 1.08997 * 109.47164 * 305.00137 * 12 11 2 14 14 O 1.42900 * 109.46858 * 65.00389 * 12 11 2 15 15 C 1.50698 * 109.46800 * 185.00121 * 12 11 2 16 16 C 1.38231 * 120.00127 * 279.72509 * 15 12 11 17 17 C 1.38241 * 119.99967 * 179.78824 * 16 15 12 18 18 C 1.38235 * 119.99920 * 0.44942 * 17 16 15 19 19 C 1.38230 * 119.99647 * 359.80709 * 18 17 16 20 20 C 1.38236 * 119.99720 * 100.00606 * 15 12 11 21 21 H 1.08998 * 109.47148 * 84.47093 * 1 2 3 22 22 H 1.09004 * 109.47258 * 204.46862 * 1 2 3 23 23 H 1.09006 * 109.47120 * 324.46510 * 1 2 3 24 24 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.47455 * 210.00315 * 11 2 1 26 26 H 1.09000 * 109.47209 * 330.00434 * 11 2 1 27 27 H 0.96701 * 114.00345 * 59.99720 * 14 12 11 28 28 H 1.08002 * 120.00385 * 0.02562 * 16 15 12 29 29 H 1.08003 * 119.99719 * 180.27397 * 17 16 15 30 30 H 1.07997 * 119.99758 * 179.83593 * 18 17 16 31 31 H 1.08002 * 119.99672 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.00489 * 359.97438 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1514 1.2310 0.4011 5 6 1.5561 2.3300 -0.5154 6 7 0.3085 2.2930 -0.9331 7 14 2.5281 3.9220 -0.6160 8 1 3.8976 3.7002 -0.0866 9 1 2.6106 4.3629 -2.0317 10 1 1.8489 4.9684 0.1895 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 1 1.5061 -1.7558 -1.9807 14 8 3.3209 -0.7734 -2.0810 15 6 3.0961 -3.0737 -1.4429 16 6 4.4525 -3.1975 -1.2073 17 6 5.0422 -4.4478 -1.2041 18 6 4.2771 -5.5735 -1.4456 19 6 2.9216 -5.4491 -1.6865 20 6 2.3311 -4.1992 -1.6854 21 1 -0.3633 0.0990 -1.0229 22 1 -0.3634 -0.9354 0.4257 23 1 -0.3634 0.8363 0.5973 24 1 -0.1061 3.0924 -1.2937 25 1 3.1499 -1.1383 0.5144 26 1 1.6084 -2.0282 0.5147 27 1 4.1836 -0.6818 -1.6539 28 1 5.0510 -2.3178 -1.0220 29 1 6.1012 -4.5449 -1.0156 30 1 4.7382 -6.5500 -1.4457 31 1 2.3237 -6.3286 -1.8748 32 1 1.2721 -4.1022 -1.8736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045059948.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:00 Heat of formation + Delta-G solvation = -20.479123 kcal Electronic energy + Delta-G solvation = -14922.107635 eV Core-core repulsion = 12461.584823 eV Total energy + Delta-G solvation = -2460.522813 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48709 -38.22969 -36.52791 -33.38500 -32.29308 -31.68839 -28.96987 -27.91461 -25.30235 -23.42199 -22.77122 -21.70455 -18.90103 -18.31554 -17.05611 -16.66977 -16.35191 -16.06317 -15.38473 -15.12986 -14.86529 -14.49773 -14.15710 -13.82829 -13.56667 -13.05962 -12.81712 -12.58131 -12.53670 -12.18127 -12.08860 -12.00363 -11.78241 -11.76417 -10.91615 -10.57773 -9.77883 -9.64663 -8.69057 -7.79983 -5.26008 0.47294 0.54261 1.46237 1.48979 1.57679 2.53061 2.90432 3.36355 3.59063 3.77764 3.99820 4.07746 4.19374 4.33533 4.34539 4.52594 4.67145 4.71489 4.85047 4.90755 5.09390 5.11945 5.23828 5.39105 5.60869 5.64891 5.65470 5.76866 5.78753 6.16175 6.37395 6.96722 7.20858 7.88823 8.33734 9.25335 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047777 B = 0.007154 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.909928 B = 3913.121119 C = 4262.110486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.615 5.615 3 C -0.242 4.242 4 H 0.073 0.927 5 C -0.055 4.055 6 N -0.944 5.944 7 Si 0.967 3.033 8 H -0.263 1.263 9 H -0.298 1.298 10 H -0.293 1.293 11 C 0.132 3.868 12 C 0.133 3.867 13 H 0.069 0.931 14 O -0.561 6.561 15 C -0.119 4.119 16 C -0.126 4.126 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.130 4.130 21 H -0.003 1.003 22 H 0.024 0.976 23 H 0.026 0.974 24 H 0.244 0.756 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.373 0.627 28 H 0.126 0.874 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.967 -15.089 0.378 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.337 5.337 3 C -0.372 4.372 4 H 0.091 0.909 5 C -0.248 4.248 6 N -0.592 5.592 7 Si 0.796 3.204 8 H -0.187 1.187 9 H -0.225 1.225 10 H -0.220 1.220 11 C 0.005 3.995 12 C 0.071 3.929 13 H 0.087 0.913 14 O -0.366 6.366 15 C -0.120 4.120 16 C -0.144 4.144 17 C -0.138 4.138 18 C -0.146 4.146 19 C -0.139 4.139 20 C -0.149 4.149 21 H 0.015 0.985 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.221 0.779 28 H 0.143 0.857 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.351 -14.886 -0.043 16.602 hybrid contribution 0.368 1.178 0.015 1.234 sum 7.718 -13.708 -0.028 15.732 Atomic orbital electron populations 1.20612 0.82781 0.95796 0.97398 1.44119 1.02081 1.01630 1.85916 1.19453 0.99051 0.86946 1.31779 0.90933 1.25883 0.97495 1.02090 0.99380 1.70273 1.12815 1.28108 1.48045 0.85189 0.78851 0.79756 0.76593 1.18674 1.22501 1.22034 1.21625 0.96600 0.87354 0.93946 1.21454 0.91624 0.83922 0.95935 0.91266 1.86632 1.29537 1.63946 1.56529 1.20725 0.95356 0.95762 1.00197 1.21101 0.93945 0.98843 1.00537 1.21432 1.01071 0.91950 0.99394 1.21509 0.93986 0.99645 0.99491 1.21426 0.95859 0.97143 0.99518 1.21197 1.00145 0.92769 1.00755 0.98512 0.95784 0.95495 0.94624 0.92606 0.92205 0.77901 0.85656 0.83674 0.83336 0.83782 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.28 8.99 127.77 1.15 10.43 16 2 N -0.61 -31.61 2.91 -726.93 -2.12 -33.73 16 3 C -0.24 -13.47 9.17 84.03 0.77 -12.69 16 4 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 5 C -0.05 -3.16 5.38 84.86 0.46 -2.70 16 6 N -0.94 -57.95 10.13 21.65 0.22 -57.73 16 7 Si 0.97 46.54 29.56 68.60 2.03 48.57 16 8 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 9 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 10 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 11 C 0.13 5.36 5.37 86.38 0.46 5.83 16 12 C 0.13 5.13 3.45 29.85 0.10 5.23 16 13 H 0.07 3.01 8.00 -2.39 -0.02 2.99 16 14 O -0.56 -23.68 12.66 -148.98 -1.89 -25.57 16 15 C -0.12 -3.69 4.97 -19.87 -0.10 -3.79 16 16 C -0.13 -3.35 9.32 22.27 0.21 -3.14 16 17 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 18 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 19 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 20 C -0.13 -3.58 9.67 22.27 0.22 -3.37 16 21 H 0.00 -0.20 7.43 -2.39 -0.02 -0.22 16 22 H 0.02 1.05 7.83 -2.38 -0.02 1.03 16 23 H 0.03 1.50 7.04 -2.38 -0.02 1.48 16 24 H 0.24 14.61 8.31 -92.70 -0.77 13.83 16 25 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 26 H 0.06 2.24 7.86 -2.39 -0.02 2.22 16 27 H 0.37 12.95 7.50 -74.06 -0.56 12.40 16 28 H 0.13 3.05 6.78 -2.91 -0.02 3.03 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.12 3.19 8.04 -2.91 -0.02 3.16 16 Total: -1.00 -68.35 271.87 2.73 -65.62 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.55 Total: 14.10 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 3.94 Total: -11.27 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -1.90 Total: -91.45 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -1.89 Total: -25.57 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -68.35 2.73 -65.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045059948.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.140 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds