Wall clock time and date at job start Sun Mar 29 2020 22:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99933 * 2 1 4 4 C 1.50699 * 109.47191 * 180.02562 * 3 2 1 5 5 C 1.38306 * 119.96204 * 270.27727 * 4 3 2 6 6 C 1.38265 * 120.14784 * 180.27606 * 5 4 3 7 7 C 1.38133 * 120.07407 * 359.44555 * 6 5 4 8 8 C 1.38886 * 119.92263 * 0.28038 * 7 6 5 9 9 N 1.39676 * 120.07159 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.47149 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00130 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99764 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99971 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47073 * 59.99787 * 15 13 11 17 17 H 1.48500 * 109.47385 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47361 * 299.99876 * 15 13 11 19 19 C 1.38089 * 119.96065 * 90.00056 * 4 3 2 20 20 H 1.08993 * 109.46736 * 299.99384 * 1 2 3 21 21 H 1.08991 * 109.47313 * 60.00000 * 1 2 3 22 22 H 1.08999 * 109.46752 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46850 * 60.00059 * 3 2 1 24 24 H 1.08999 * 109.46925 * 300.00620 * 3 2 1 25 25 H 1.08001 * 119.92853 * 0.02562 * 5 4 3 26 26 H 1.08002 * 119.96572 * 179.72711 * 6 5 4 27 27 H 1.07999 * 120.03792 * 180.25490 * 7 6 5 28 28 H 0.97003 * 119.99650 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.47324 * 300.00914 * 10 9 8 30 30 H 1.09000 * 109.46859 * 60.00373 * 10 9 8 31 31 H 0.96999 * 119.99505 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.03755 * 0.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2012 1.1260 1.1973 6 6 5.5800 1.0226 1.2012 7 6 6.2734 0.9678 0.0078 8 6 5.5845 1.0227 -1.1969 9 7 6.2826 0.9681 -2.4054 10 6 7.7431 0.8535 -2.4033 11 6 8.2461 0.8149 -3.8233 12 1 7.5477 0.8698 -4.6452 13 6 9.5979 0.7084 -4.0732 14 7 10.4483 0.6410 -3.0722 15 14 10.2214 0.6599 -5.8333 16 1 9.8242 1.9077 -6.5337 17 1 11.7018 0.5438 -5.8311 18 1 9.6337 -0.5099 -6.5346 19 6 4.1996 1.1323 -1.1973 20 1 -0.3632 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6886 1.8463 0.8900 24 1 1.6885 1.8464 -0.8899 25 1 3.6611 1.1637 2.1318 26 1 6.1151 0.9800 2.1384 27 1 7.3501 0.8829 0.0116 28 1 5.8004 1.0069 -3.2462 29 1 8.1742 1.7121 -1.8886 30 1 8.0349 -0.0623 -1.8891 31 1 11.3993 0.5665 -3.2480 32 1 3.6609 1.1756 -2.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049507916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:53 Heat of formation + Delta-G solvation = -28.441618 kcal Electronic energy + Delta-G solvation = -14116.205392 eV Core-core repulsion = 11655.337300 eV Total energy + Delta-G solvation = -2460.868092 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08869 -37.54497 -34.99021 -32.65272 -31.32046 -29.33826 -27.10503 -26.23975 -25.16638 -22.66896 -21.82231 -19.89699 -17.26650 -16.37915 -16.11720 -15.80964 -15.29157 -14.97993 -14.56595 -14.19916 -13.22133 -13.18247 -13.01544 -12.39286 -12.14927 -11.94923 -11.89319 -11.36244 -11.12080 -10.92257 -10.80791 -10.46073 -10.11185 -9.69859 -9.40728 -9.40500 -8.54293 -8.34558 -6.53627 -6.20693 -4.25945 1.83107 2.20913 3.24368 3.28926 3.30891 3.88332 4.25697 4.54869 4.60362 5.04698 5.13660 5.16412 5.27838 5.31352 5.41864 5.55489 5.56446 5.73296 5.95175 6.13915 6.38462 6.48720 6.96686 7.00732 7.12531 7.13709 7.17151 7.43348 7.46204 7.66735 7.95318 8.30702 8.67825 8.91054 9.40352 10.89947 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048772 B = 0.005106 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.965292 B = 5482.645653 C = 5951.064271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.106 3.894 4 C -0.050 4.050 5 C -0.183 4.183 6 C -0.074 4.074 7 C -0.195 4.195 8 C 0.230 3.770 9 N -0.730 5.730 10 C 0.251 3.749 11 C -0.540 4.540 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.194 4.194 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.084 0.916 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.391 0.609 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.266 0.734 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 1.379 6.115 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.030 3.970 4 C -0.051 4.051 5 C -0.204 4.204 6 C -0.093 4.093 7 C -0.219 4.219 8 C 0.121 3.879 9 N -0.352 5.352 10 C 0.130 3.870 11 C -0.578 4.578 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.201 1.201 19 C -0.218 4.218 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.143 0.857 28 H 0.224 0.776 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.992 1.178 6.128 15.320 hybrid contribution 0.090 0.198 -1.250 1.269 sum -13.902 1.376 4.878 14.797 Atomic orbital electron populations 1.22728 0.81637 1.02564 0.99712 1.88019 1.19022 1.27853 1.95322 1.21349 0.90748 0.84654 1.00217 1.19094 0.92651 1.00094 0.93290 1.20516 0.94155 1.09251 0.96484 1.20788 0.93809 0.97535 0.97142 1.20804 1.00343 1.09627 0.91087 1.18018 0.90729 0.91526 0.87665 1.45500 1.08659 1.77391 1.03691 1.19104 0.73783 0.96459 0.97688 1.21167 0.92468 1.52494 0.91689 0.92044 1.24929 0.96529 0.94652 0.97841 1.69937 1.02860 1.48933 1.30967 0.86464 0.77699 0.78741 0.83976 1.20070 1.21026 1.20051 1.20352 0.92367 1.11651 0.97390 0.94288 0.94243 0.89794 0.92806 0.92849 0.87327 0.86715 0.85721 0.77597 0.96164 0.96157 0.92399 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.40 10.69 -35.23 -0.38 -5.78 16 3 C 0.11 1.40 6.06 36.01 0.22 1.62 16 4 C -0.05 -0.82 5.51 -104.65 -0.58 -1.39 16 5 C -0.18 -2.90 9.70 -39.55 -0.38 -3.29 16 6 C -0.07 -1.23 10.04 -39.61 -0.40 -1.63 16 7 C -0.20 -3.82 9.31 -39.38 -0.37 -4.18 16 8 C 0.23 4.62 6.65 -83.79 -0.56 4.07 16 9 N -0.73 -15.92 5.73 -59.81 -0.34 -16.27 16 10 C 0.25 6.46 4.67 -5.20 -0.02 6.44 16 11 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.19 -3.45 9.55 -39.38 -0.38 -3.82 16 20 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 24 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.12 2.56 6.73 -52.49 -0.35 2.21 16 28 H 0.39 7.93 8.33 -40.82 -0.34 7.59 16 29 H 0.02 0.56 7.95 -51.93 -0.41 0.15 16 30 H 0.02 0.57 7.95 -51.93 -0.41 0.15 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 32 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 279.42 15.07 4.21 4.21 Total: -1.00 -29.63 279.42 -6.99 -36.62 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.43 Total: 4.43 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.77 Total: -14.20 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.39 Total: -41.23 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.38 Total: -5.78 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.63 -6.99 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049507916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.176 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds