Wall clock time and date at job start Sun Mar 29 2020 22:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99933 * 2 1 4 4 C 1.50699 * 109.47191 * 180.02562 * 3 2 1 5 5 C 1.38306 * 119.96204 * 270.27727 * 4 3 2 6 6 C 1.38265 * 120.14784 * 180.27606 * 5 4 3 7 7 C 1.38133 * 120.07407 * 359.44555 * 6 5 4 8 8 C 1.38886 * 119.92263 * 0.28038 * 7 6 5 9 9 N 1.39676 * 120.07159 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.47149 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00130 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99764 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99971 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47073 * 59.99787 * 15 13 11 17 17 H 1.48500 * 109.47385 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47361 * 299.99876 * 15 13 11 19 19 C 1.38089 * 119.96065 * 90.00056 * 4 3 2 20 20 H 1.08993 * 109.46736 * 299.99384 * 1 2 3 21 21 H 1.08991 * 109.47313 * 60.00000 * 1 2 3 22 22 H 1.08999 * 109.46752 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46850 * 60.00059 * 3 2 1 24 24 H 1.08999 * 109.46925 * 300.00620 * 3 2 1 25 25 H 1.08001 * 119.92853 * 0.02562 * 5 4 3 26 26 H 1.08002 * 119.96572 * 179.72711 * 6 5 4 27 27 H 1.07999 * 120.03792 * 180.25490 * 7 6 5 28 28 H 0.97003 * 119.99650 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.47324 * 300.00914 * 10 9 8 30 30 H 1.09000 * 109.46859 * 60.00373 * 10 9 8 31 31 H 0.96999 * 119.99505 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.03755 * 0.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2012 1.1260 1.1973 6 6 5.5800 1.0226 1.2012 7 6 6.2734 0.9678 0.0078 8 6 5.5845 1.0227 -1.1969 9 7 6.2826 0.9681 -2.4054 10 6 7.7431 0.8535 -2.4033 11 6 8.2461 0.8149 -3.8233 12 1 7.5477 0.8698 -4.6452 13 6 9.5979 0.7084 -4.0732 14 7 10.4483 0.6410 -3.0722 15 14 10.2214 0.6599 -5.8333 16 1 9.8242 1.9077 -6.5337 17 1 11.7018 0.5438 -5.8311 18 1 9.6337 -0.5099 -6.5346 19 6 4.1996 1.1323 -1.1973 20 1 -0.3632 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6886 1.8463 0.8900 24 1 1.6885 1.8464 -0.8899 25 1 3.6611 1.1637 2.1318 26 1 6.1151 0.9800 2.1384 27 1 7.3501 0.8829 0.0116 28 1 5.8004 1.0069 -3.2462 29 1 8.1742 1.7121 -1.8886 30 1 8.0349 -0.0623 -1.8891 31 1 11.3993 0.5665 -3.2480 32 1 3.6609 1.1756 -2.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049507916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:53 Heat of formation + Delta-G solvation = -47.504675 kcal Electronic energy + Delta-G solvation = -14117.032028 eV Core-core repulsion = 11655.337300 eV Total energy + Delta-G solvation = -2461.694728 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44518 -38.61110 -36.66553 -34.63424 -32.60988 -31.01512 -28.17879 -27.98686 -26.21953 -24.56095 -23.22747 -21.36203 -19.10968 -17.67067 -17.24726 -17.19348 -16.72733 -16.51840 -15.85940 -15.63018 -15.05623 -14.60211 -14.50702 -14.07055 -13.50209 -13.38291 -13.05742 -12.90708 -12.74236 -12.38450 -12.25307 -12.07112 -11.68870 -11.46078 -11.07226 -10.59103 -10.55250 -9.72608 -8.31790 -8.16082 -6.46083 0.46209 0.80555 1.40117 1.43406 1.51667 2.33320 2.76308 2.90755 3.03218 3.34825 3.96898 4.05424 4.29782 4.39552 4.49390 4.55449 4.61763 4.64365 4.74400 4.88863 4.90422 5.04951 5.19711 5.27801 5.50865 5.52691 5.67703 5.77620 5.86246 6.11697 6.28806 6.47195 6.73854 7.14062 7.27993 8.79982 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048772 B = 0.005106 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.965292 B = 5482.645653 C = 5951.064271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.108 3.892 4 C -0.053 4.053 5 C -0.173 4.173 6 C -0.073 4.073 7 C -0.221 4.221 8 C 0.201 3.799 9 N -0.737 5.737 10 C 0.273 3.727 11 C -0.560 4.560 12 H 0.070 0.930 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.979 3.021 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.194 4.194 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.099 0.901 28 H 0.396 0.604 29 H -0.009 1.009 30 H -0.011 1.011 31 H 0.270 0.730 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 1.648 6.121 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.032 3.968 4 C -0.054 4.054 5 C -0.194 4.194 6 C -0.091 4.091 7 C -0.245 4.245 8 C 0.095 3.905 9 N -0.363 5.363 10 C 0.150 3.850 11 C -0.598 4.598 12 H 0.089 0.911 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.803 3.197 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.218 4.218 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.111 0.889 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.160 0.840 26 H 0.159 0.841 27 H 0.117 0.883 28 H 0.231 0.769 29 H 0.009 0.991 30 H 0.007 0.993 31 H 0.078 0.922 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.157 1.452 6.165 17.354 hybrid contribution 0.604 0.110 -1.095 1.255 sum -15.553 1.561 5.070 16.433 Atomic orbital electron populations 1.22949 0.79340 1.03747 1.01129 1.87958 1.21546 1.28241 1.95633 1.21383 0.88360 0.84895 1.02172 1.19560 0.94863 0.98313 0.92645 1.20963 0.93730 1.06791 0.97882 1.21093 0.94633 0.96416 0.96992 1.20845 0.99484 1.11591 0.92547 1.18296 0.91904 0.93319 0.87024 1.45138 1.06938 1.79397 1.04796 1.18548 0.76243 0.93628 0.96597 1.21561 0.93204 1.52618 0.92429 0.91146 1.25939 0.96671 0.93862 1.02595 1.70075 1.03270 1.49660 1.33494 0.85291 0.77084 0.79231 0.78138 1.19011 1.20530 1.19107 1.20558 0.91232 1.11008 0.98955 0.92515 0.93129 0.88863 0.90259 0.91556 0.83980 0.84079 0.88264 0.76941 0.99097 0.99301 0.92152 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -10.44 10.69 -148.98 -1.59 -12.03 16 3 C 0.11 2.47 6.06 71.24 0.43 2.90 16 4 C -0.05 -1.59 5.51 -19.88 -0.11 -1.70 16 5 C -0.17 -5.02 9.70 22.29 0.22 -4.80 16 6 C -0.07 -2.36 10.04 22.25 0.22 -2.14 16 7 C -0.22 -8.99 9.31 22.40 0.21 -8.78 16 8 C 0.20 8.30 6.65 38.21 0.25 8.55 16 9 N -0.74 -33.57 5.73 -343.15 -1.96 -35.54 16 10 C 0.27 14.89 4.67 85.63 0.40 15.29 16 11 C -0.56 -31.47 9.28 25.60 0.24 -31.23 16 12 H 0.07 3.73 7.60 -2.91 -0.02 3.70 16 13 C 0.01 0.52 5.46 84.66 0.46 0.98 16 14 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 15 Si 0.98 43.16 29.54 68.60 2.03 45.18 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 19 C -0.19 -6.76 9.55 22.40 0.21 -6.55 16 20 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 21 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 24 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 25 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 26 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.10 4.45 6.73 -2.91 -0.02 4.43 16 28 H 0.40 16.59 8.33 -92.71 -0.77 15.82 16 29 H -0.01 -0.52 7.95 -2.39 -0.02 -0.54 16 30 H -0.01 -0.64 7.95 -2.39 -0.02 -0.66 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -65.28 279.42 2.87 -62.40 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.33 Total: 20.66 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.79 Total: -25.84 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -1.68 Total: -90.38 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.59 Total: -12.03 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -65.28 2.87 -62.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049507916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.900 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds