Wall clock time and date at job start Sun Mar 29 2020 22:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99582 * 2 1 4 4 C 1.50702 * 109.46680 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.03939 * 0.25524 * 4 3 2 6 6 C 1.38267 * 120.07286 * 180.28231 * 5 4 3 7 7 C 1.38305 * 120.14868 * 359.73553 * 6 5 4 8 8 C 1.38080 * 120.07989 * 359.97438 * 7 6 5 9 9 C 1.38887 * 120.03667 * 180.02562 * 4 3 2 10 10 N 1.39679 * 120.07586 * 359.97438 * 9 4 3 11 11 C 1.46499 * 120.00084 * 179.72804 * 10 9 4 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 H 1.08997 * 109.47051 * 299.99689 * 1 2 3 21 21 H 1.09004 * 109.47167 * 60.00079 * 1 2 3 22 22 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47357 * 60.00208 * 3 2 1 24 24 H 1.08993 * 109.47102 * 299.99706 * 3 2 1 25 25 H 1.08002 * 119.96406 * 0.02562 * 5 4 3 26 26 H 1.07997 * 119.92253 * 179.76632 * 6 5 4 27 27 H 1.08005 * 119.95839 * 180.02562 * 7 6 5 28 28 H 1.07994 * 120.03894 * 180.02562 * 8 7 6 29 29 H 0.97000 * 119.99495 * 359.72173 * 10 9 4 30 30 H 1.09002 * 109.47391 * 59.99811 * 11 10 9 31 31 H 1.09001 * 109.46813 * 299.99868 * 11 10 9 32 32 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1074 -0.0601 -0.0064 6 6 5.4856 -0.1701 -0.0011 7 6 6.2732 0.9668 0.0045 8 6 5.6851 2.2161 0.0043 9 6 4.3005 2.3302 -0.0002 10 7 3.7022 3.5924 0.0003 11 6 4.5350 4.7977 0.0067 12 6 3.6515 6.0186 0.0053 13 1 2.5773 5.9078 0.0004 14 6 4.2148 7.2771 0.0111 15 7 3.4438 8.3425 0.0103 16 14 6.0729 7.4687 0.0202 17 1 6.5717 7.5231 -1.3775 18 1 6.4376 8.7238 0.7250 19 1 6.6865 6.3116 0.7200 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8463 -0.8900 25 1 3.4952 -0.9499 -0.0109 26 1 5.9482 -1.1460 -0.0019 27 1 7.3495 0.8773 0.0082 28 1 6.3007 3.1034 0.0082 29 1 2.7354 3.6708 -0.0038 30 1 5.1681 4.8067 -0.8805 31 1 5.1604 4.8024 0.8995 32 1 3.8400 9.2279 0.0141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049508510.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:56 Heat of formation + Delta-G solvation = -24.444986 kcal Electronic energy + Delta-G solvation = -14493.690120 eV Core-core repulsion = 12032.995335 eV Total energy + Delta-G solvation = -2460.694785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30535 -37.41533 -35.11201 -32.66032 -31.54125 -29.44236 -27.40232 -26.44980 -25.24894 -22.69477 -20.83434 -20.50797 -17.62975 -16.42571 -16.31669 -15.78177 -15.30491 -15.02809 -14.17654 -13.99201 -13.64030 -13.44347 -13.05972 -12.74119 -12.48743 -12.32221 -11.76656 -11.50110 -11.05349 -10.90618 -10.65086 -10.45441 -10.02145 -9.78203 -9.52129 -9.45872 -8.73782 -8.31045 -6.71143 -6.26224 -4.28383 1.84507 2.14020 3.19300 3.26783 3.29039 3.80540 4.25125 4.31548 4.34074 5.08341 5.12880 5.32020 5.34818 5.43121 5.50005 5.57532 5.61275 5.67275 5.88440 6.08146 6.23393 6.49891 6.60783 6.81479 6.84664 6.96760 7.05243 7.27722 7.32901 7.43658 7.90532 8.34479 8.52933 8.75994 9.33005 10.86215 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.007441 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.029318 B = 3762.131840 C = 4699.403289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.115 3.885 4 C -0.187 4.187 5 C -0.048 4.048 6 C -0.204 4.204 7 C -0.070 4.070 8 C -0.206 4.206 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.223 3.777 12 C -0.542 4.542 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.892 5.892 16 Si 0.879 3.121 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.263 1.263 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.395 0.605 30 H 0.014 0.986 31 H 0.019 0.981 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -14.402 0.005 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.039 3.961 4 C -0.193 4.193 5 C -0.067 4.067 6 C -0.224 4.224 7 C -0.089 4.089 8 C -0.229 4.229 9 C 0.129 3.871 10 N -0.347 5.347 11 C 0.100 3.900 12 C -0.580 4.580 13 H 0.096 0.904 14 C -0.127 4.127 15 N -0.529 5.529 16 Si 0.705 3.295 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.187 1.187 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.102 0.898 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.141 0.859 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.229 0.771 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.070 -14.120 0.010 14.120 hybrid contribution 0.340 0.652 -0.016 0.736 sum 0.410 -13.468 -0.006 13.474 Atomic orbital electron populations 1.22724 0.81254 1.02448 1.00124 1.87816 1.19355 1.27963 1.95474 1.20993 0.90771 0.84272 1.00080 1.19010 0.93066 0.92858 1.14337 1.20596 0.94192 0.96296 0.95612 1.20722 0.93680 0.97760 1.10274 1.20825 0.98947 0.92137 0.96973 1.20621 0.92737 0.98052 1.11535 1.17755 0.92103 0.85216 0.92022 1.45206 1.08894 1.02535 1.78051 1.19500 0.91966 0.82857 0.95677 1.21058 0.94868 0.88906 1.53141 0.90434 1.24822 0.98478 0.95491 0.93946 1.69881 1.35491 0.98179 1.49370 0.86794 0.85495 0.78250 0.78916 1.19825 1.20826 1.18746 0.94055 0.94064 0.89808 0.92661 0.92686 0.85947 0.87163 0.86887 0.86101 0.77079 0.96792 0.96330 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.55 9.18 -35.23 -0.32 -5.87 16 3 C 0.12 1.76 5.07 36.01 0.18 1.94 16 4 C -0.19 -3.23 5.90 -104.42 -0.62 -3.85 16 5 C -0.05 -0.77 9.37 -39.61 -0.37 -1.14 16 6 C -0.20 -3.06 10.04 -39.55 -0.40 -3.46 16 7 C -0.07 -1.10 10.04 -39.61 -0.40 -1.49 16 8 C -0.21 -3.76 9.31 -39.38 -0.37 -4.13 16 9 C 0.24 4.53 6.63 -83.78 -0.56 3.98 16 10 N -0.72 -14.98 5.66 -59.80 -0.34 -15.32 16 11 C 0.22 5.26 3.73 -5.19 -0.02 5.24 16 12 C -0.54 -14.82 9.83 -34.44 -0.34 -15.15 16 13 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 16 Si 0.88 20.71 27.47 -169.99 -4.67 16.05 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 20 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 21 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 24 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 25 H 0.12 1.80 7.00 -52.49 -0.37 1.43 16 26 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 28 H 0.12 2.24 6.73 -52.49 -0.35 1.89 16 29 H 0.39 7.79 7.01 -40.82 -0.29 7.51 16 30 H 0.01 0.34 7.38 -51.93 -0.38 -0.05 16 31 H 0.02 0.45 7.01 -51.93 -0.36 0.09 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -29.49 271.38 -6.62 -36.11 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.28 Total: 5.13 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.86 Total: -14.59 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.44 Total: -40.92 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.32 Total: -5.87 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.49 -6.62 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049508510.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.660 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds