Wall clock time and date at job start Sun Mar 29 2020 22:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99582 * 2 1 4 4 C 1.50702 * 109.46680 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.03939 * 0.25524 * 4 3 2 6 6 C 1.38267 * 120.07286 * 180.28231 * 5 4 3 7 7 C 1.38305 * 120.14868 * 359.73553 * 6 5 4 8 8 C 1.38080 * 120.07989 * 359.97438 * 7 6 5 9 9 C 1.38887 * 120.03667 * 180.02562 * 4 3 2 10 10 N 1.39679 * 120.07586 * 359.97438 * 9 4 3 11 11 C 1.46499 * 120.00084 * 179.72804 * 10 9 4 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 H 1.08997 * 109.47051 * 299.99689 * 1 2 3 21 21 H 1.09004 * 109.47167 * 60.00079 * 1 2 3 22 22 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47357 * 60.00208 * 3 2 1 24 24 H 1.08993 * 109.47102 * 299.99706 * 3 2 1 25 25 H 1.08002 * 119.96406 * 0.02562 * 5 4 3 26 26 H 1.07997 * 119.92253 * 179.76632 * 6 5 4 27 27 H 1.08005 * 119.95839 * 180.02562 * 7 6 5 28 28 H 1.07994 * 120.03894 * 180.02562 * 8 7 6 29 29 H 0.97000 * 119.99495 * 359.72173 * 10 9 4 30 30 H 1.09002 * 109.47391 * 59.99811 * 11 10 9 31 31 H 1.09001 * 109.46813 * 299.99868 * 11 10 9 32 32 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1074 -0.0601 -0.0064 6 6 5.4856 -0.1701 -0.0011 7 6 6.2732 0.9668 0.0045 8 6 5.6851 2.2161 0.0043 9 6 4.3005 2.3302 -0.0002 10 7 3.7022 3.5924 0.0003 11 6 4.5350 4.7977 0.0067 12 6 3.6515 6.0186 0.0053 13 1 2.5773 5.9078 0.0004 14 6 4.2148 7.2771 0.0111 15 7 3.4438 8.3425 0.0103 16 14 6.0729 7.4687 0.0202 17 1 6.5717 7.5231 -1.3775 18 1 6.4376 8.7238 0.7250 19 1 6.6865 6.3116 0.7200 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8463 -0.8900 25 1 3.4952 -0.9499 -0.0109 26 1 5.9482 -1.1460 -0.0019 27 1 7.3495 0.8773 0.0082 28 1 6.3007 3.1034 0.0082 29 1 2.7354 3.6708 -0.0038 30 1 5.1681 4.8067 -0.8805 31 1 5.1604 4.8024 0.8995 32 1 3.8400 9.2279 0.0141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049508510.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:55 Heat of formation + Delta-G solvation = -43.474717 kcal Electronic energy + Delta-G solvation = -14494.515311 eV Core-core repulsion = 12032.995335 eV Total energy + Delta-G solvation = -2461.519976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61109 -38.52859 -36.70925 -34.64614 -32.83384 -31.05056 -28.79986 -27.77599 -26.37066 -24.46141 -22.13473 -22.02850 -19.42183 -17.91233 -17.62951 -16.86112 -16.72922 -16.54435 -15.67616 -15.29784 -15.24311 -14.86636 -14.68347 -14.26653 -14.02068 -13.47123 -13.08965 -12.94491 -12.66440 -12.46511 -11.96541 -11.83463 -11.80320 -11.55702 -11.08488 -10.83813 -10.70472 -9.58596 -8.40510 -8.18593 -6.48536 0.56131 0.82195 1.34496 1.35429 1.46810 2.27970 2.67992 2.84705 2.94305 3.02989 3.95707 4.18324 4.26956 4.34817 4.39476 4.56692 4.58114 4.63879 4.66182 4.78515 4.86054 4.97966 5.06525 5.24431 5.30211 5.51623 5.62294 5.79153 5.90519 6.19147 6.22968 6.48955 6.62522 6.97594 7.19614 8.75243 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.007441 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.029318 B = 3762.131840 C = 4699.403289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.119 3.881 4 C -0.194 4.194 5 C -0.054 4.054 6 C -0.191 4.191 7 C -0.069 4.069 8 C -0.224 4.224 9 C 0.210 3.790 10 N -0.734 5.734 11 C 0.239 3.761 12 C -0.552 4.552 13 H 0.043 0.957 14 C 0.019 3.981 15 N -0.938 5.938 16 Si 0.948 3.052 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.247 1.247 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.107 0.893 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.136 0.864 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.113 0.887 29 H 0.394 0.606 30 H 0.015 0.985 31 H 0.017 0.983 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -16.551 0.001 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.042 3.958 4 C -0.199 4.199 5 C -0.073 4.073 6 C -0.211 4.211 7 C -0.087 4.087 8 C -0.247 4.247 9 C 0.105 3.895 10 N -0.360 5.360 11 C 0.115 3.885 12 C -0.589 4.589 13 H 0.061 0.939 14 C -0.181 4.181 15 N -0.577 5.577 16 Si 0.770 3.230 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.170 1.170 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.125 0.875 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.154 0.846 26 H 0.162 0.838 27 H 0.162 0.838 28 H 0.131 0.869 29 H 0.229 0.771 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.706 -16.325 0.006 16.414 hybrid contribution -0.271 1.171 -0.016 1.202 sum 1.436 -15.154 -0.011 15.222 Atomic orbital electron populations 1.22970 0.79355 1.04211 1.00705 1.87777 1.21405 1.27110 1.95557 1.20871 0.90095 0.84914 0.99876 1.19267 0.94017 0.92889 1.13716 1.20871 0.95068 0.96110 0.95228 1.21157 0.93265 0.99116 1.07605 1.21171 1.00688 0.91153 0.95738 1.20797 0.92432 0.99125 1.12380 1.17985 0.92860 0.84801 0.93898 1.44954 1.08558 1.02520 1.80014 1.19130 0.91380 0.82568 0.95402 1.21329 0.93991 0.90856 1.52764 0.93851 1.25774 1.03932 0.94986 0.93374 1.70018 1.37936 0.98898 1.50834 0.85708 0.78939 0.78793 0.79561 1.18771 1.20268 1.17022 0.93498 0.93499 0.87470 0.92903 0.92906 0.84578 0.83791 0.83826 0.86897 0.77130 0.96709 0.96563 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -10.86 9.18 -148.98 -1.37 -12.23 16 3 C 0.12 3.59 5.07 71.24 0.36 3.96 16 4 C -0.19 -6.50 5.90 -19.73 -0.12 -6.62 16 5 C -0.05 -1.59 9.37 22.25 0.21 -1.39 16 6 C -0.19 -5.04 10.04 22.29 0.22 -4.81 16 7 C -0.07 -1.95 10.04 22.25 0.22 -1.72 16 8 C -0.22 -7.88 9.31 22.40 0.21 -7.67 16 9 C 0.21 7.94 6.63 38.21 0.25 8.19 16 10 N -0.73 -30.98 5.66 -343.12 -1.94 -32.92 16 11 C 0.24 11.38 3.73 85.63 0.32 11.70 16 12 C -0.55 -31.05 9.83 25.60 0.25 -30.80 16 13 H 0.04 2.66 7.84 -2.91 -0.02 2.63 16 14 C 0.02 1.06 5.47 84.66 0.46 1.53 16 15 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16 16 Si 0.95 42.56 27.47 68.60 1.88 44.45 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 20 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.05 1.60 8.06 -2.39 -0.02 1.58 16 24 H 0.05 1.60 8.05 -2.39 -0.02 1.58 16 25 H 0.14 3.61 7.00 -2.91 -0.02 3.59 16 26 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 27 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.11 4.07 6.73 -2.91 -0.02 4.05 16 29 H 0.39 16.21 7.01 -92.71 -0.65 15.56 16 30 H 0.02 0.71 7.38 -2.39 -0.02 0.69 16 31 H 0.02 0.79 7.01 -2.39 -0.02 0.77 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -63.73 271.38 2.92 -60.81 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.40 Total: 22.36 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 3.65 Total: -25.93 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -1.64 Total: -89.46 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -1.37 Total: -12.23 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.88 Total: 44.45 kcal Total: -63.73 2.92 -60.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049508510.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.337 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds