Wall clock time and date at job start Sun Mar 29 2020 22:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46831 * 2 1 4 4 C 1.35945 * 116.99814 * 180.02562 * 3 2 1 5 5 C 1.38795 * 119.96443 * 359.72165 * 4 3 2 6 6 C 1.38005 * 120.03116 * 179.76517 * 5 4 3 7 7 C 1.39084 * 119.96378 * 0.51502 * 6 5 4 8 8 N 1.39402 * 120.03466 * 179.72158 * 7 6 5 9 9 C 1.46498 * 120.00133 * 180.02562 * 8 7 6 10 10 C 1.36840 * 119.99748 * 0.02562 * 8 7 6 11 11 H 1.07992 * 120.00246 * 25.39753 * 10 8 7 12 12 C 1.38757 * 119.99534 * 205.39926 * 10 8 7 13 13 N 1.31620 * 120.00421 * 14.86922 * 12 10 8 14 14 Si 1.86800 * 119.99619 * 194.87542 * 12 10 8 15 15 H 1.48497 * 109.47602 * 59.99625 * 14 12 10 16 16 H 1.48504 * 109.47162 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47005 * 299.99776 * 14 12 10 18 18 C 1.39086 * 119.93319 * 359.73931 * 7 6 5 19 19 C 1.37996 * 119.96246 * 0.02562 * 18 7 6 20 20 H 1.09002 * 109.46770 * 60.00363 * 1 2 3 21 21 H 1.08999 * 109.46537 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47254 * 300.00173 * 1 2 3 23 23 H 1.09005 * 109.47211 * 240.00143 * 2 1 3 24 24 H 1.09000 * 109.47410 * 120.00027 * 2 1 3 25 25 H 1.08001 * 119.98720 * 0.02654 * 5 4 3 26 26 H 1.08000 * 120.01921 * 180.23209 * 6 5 4 27 27 H 1.09000 * 109.47336 * 84.84013 * 9 8 7 28 28 H 1.09000 * 109.46834 * 204.83876 * 9 8 7 29 29 H 1.09001 * 109.46766 * 324.83804 * 9 8 7 30 30 H 0.96996 * 120.00054 * 179.97438 * 13 12 10 31 31 H 1.08001 * 120.01433 * 179.97438 * 18 7 6 32 32 H 1.08004 * 119.98079 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3540 1.5255 -0.0005 5 6 4.1988 0.4243 0.0048 6 6 5.5672 0.6035 -0.0007 7 6 6.0995 1.8885 -0.0006 8 7 7.4815 2.0712 -0.0003 9 6 8.0414 3.4250 0.0003 10 6 8.3151 0.9860 -0.0004 11 1 7.9741 0.0433 -0.4019 12 6 9.5984 1.0970 0.5153 13 7 9.9209 2.1328 1.2607 14 14 10.8686 -0.2235 0.1516 15 1 11.0784 -0.3180 -1.3154 16 1 12.1506 0.1269 0.8141 17 1 10.3862 -1.5297 0.6678 18 6 5.2515 2.9910 -0.0006 19 6 3.8837 2.8084 -0.0001 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7852 -0.5734 0.0089 26 1 6.2244 -0.2535 -0.0003 27 1 8.0946 3.7958 1.0239 28 1 9.0421 3.4044 -0.4312 29 1 7.4039 4.0820 -0.5915 30 1 10.8179 2.2102 1.6215 31 1 5.6635 3.9893 -0.0002 32 1 3.2250 3.6643 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806615.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:46 Heat of formation + Delta-G solvation = -2.045470 kcal Electronic energy + Delta-G solvation = -14628.033848 eV Core-core repulsion = 12168.310378 eV Total energy + Delta-G solvation = -2459.723469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.19575 -37.50593 -34.96021 -31.93345 -31.17074 -30.06287 -27.58020 -26.49084 -23.77771 -23.00038 -21.22448 -19.95960 -17.53790 -17.26148 -15.98043 -15.56472 -14.89038 -14.42067 -13.81938 -13.42755 -13.29069 -12.82359 -12.71836 -12.57534 -12.18169 -11.72171 -11.39922 -11.20208 -11.11875 -11.07452 -10.77012 -10.58285 -10.38109 -10.23529 -9.60245 -9.12371 -8.28249 -8.04893 -6.49532 -6.16603 -3.72113 2.36279 2.65492 3.17856 3.19238 3.21433 3.93101 4.08361 4.71900 5.03675 5.12018 5.16947 5.25929 5.47055 5.67558 5.78599 5.83940 5.95774 6.08561 6.29777 6.38175 6.46050 6.64117 6.88689 7.00328 7.09337 7.21812 7.34436 7.46555 7.52013 7.68929 8.00065 8.36808 8.69071 9.33873 9.67713 10.67645 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047822 B = 0.006439 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.363289 B = 4347.640083 C = 4843.169528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.330 6.330 4 C -0.003 4.003 5 C -0.143 4.143 6 C -0.183 4.183 7 C 0.192 3.808 8 N -0.455 5.455 9 C 0.125 3.875 10 C -0.307 4.307 11 H 0.092 0.908 12 C 0.027 3.973 13 N -0.877 5.877 14 Si 0.923 3.077 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.273 1.273 18 C -0.208 4.208 19 C -0.087 4.087 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.268 0.732 31 H 0.114 0.886 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -2.077 -2.255 9.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.246 6.246 4 C -0.049 4.049 5 C -0.162 4.162 6 C -0.207 4.207 7 C 0.077 3.923 8 N -0.144 5.144 9 C -0.019 4.019 10 C -0.436 4.436 11 H 0.109 0.891 12 C -0.177 4.177 13 N -0.514 5.514 14 Si 0.750 3.250 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.199 1.199 18 C -0.232 4.232 19 C -0.107 4.107 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.125 0.875 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.965 -1.803 -2.138 9.391 hybrid contribution 0.900 -0.872 -0.020 1.254 sum -8.065 -2.676 -2.157 8.766 Atomic orbital electron populations 1.21744 0.93922 1.02012 1.02973 1.22478 0.94704 0.83820 1.00576 1.85909 1.20345 1.27079 1.91231 1.18361 0.81032 0.94042 1.11441 1.20766 0.93846 0.96523 1.05103 1.20309 0.93601 0.96057 1.10737 1.17989 0.84578 0.93154 0.96577 1.42430 1.00340 1.05458 1.66152 1.21339 0.97651 0.82778 1.00122 1.19459 0.94215 0.92010 1.37899 0.89060 1.25325 0.99025 0.98148 0.95205 1.70084 1.20728 1.30072 1.30471 0.86043 0.79634 0.80628 0.78691 1.19954 1.20880 1.19852 1.20225 0.91944 0.97294 1.13771 1.19836 0.94081 0.93783 1.02998 0.91952 0.91156 0.91939 0.93067 0.93035 0.87459 0.86365 0.93513 0.91339 0.95513 0.92186 0.86768 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 2 C 0.06 0.84 5.46 37.16 0.20 1.04 16 3 O -0.33 -5.97 10.14 -19.57 -0.20 -6.17 16 4 C 0.00 -0.05 6.69 -39.17 -0.26 -0.32 16 5 C -0.14 -2.87 9.03 -39.46 -0.36 -3.22 16 6 C -0.18 -4.12 9.26 -39.35 -0.36 -4.49 16 7 C 0.19 4.59 6.52 -83.79 -0.55 4.04 16 8 N -0.46 -11.61 3.12 -120.48 -0.38 -11.98 16 9 C 0.12 2.93 8.33 59.85 0.50 3.43 16 10 C -0.31 -8.11 8.94 -15.12 -0.14 -8.25 16 11 H 0.09 2.34 6.26 -52.49 -0.33 2.01 16 12 C 0.03 0.69 4.98 -17.45 -0.09 0.61 16 13 N -0.88 -23.54 11.03 55.49 0.61 -22.93 16 14 Si 0.92 20.06 29.58 -169.99 -5.03 15.03 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 C -0.21 -4.47 9.20 -39.36 -0.36 -4.83 16 19 C -0.09 -1.76 9.98 -39.46 -0.39 -2.15 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.69 7.67 -51.93 -0.40 0.29 16 24 H 0.05 0.70 7.65 -51.93 -0.40 0.30 16 25 H 0.11 1.86 6.29 -52.49 -0.33 1.53 16 26 H 0.12 2.67 6.21 -52.49 -0.33 2.34 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 28 H 0.07 1.67 6.87 -51.93 -0.36 1.31 16 29 H 0.03 0.55 6.48 -51.93 -0.34 0.21 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.11 2.29 6.25 -52.49 -0.33 1.96 16 32 H 0.11 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -28.28 266.17 -6.44 -34.72 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.03 Total: 2.68 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.42 Total: -15.36 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.24 Total: -34.91 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.20 Total: -6.17 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.28 -6.44 -34.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806615.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.670 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds