Wall clock time and date at job start Sun Mar 29 2020 22:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47440 * 2 1 4 4 C 1.46499 * 119.99533 * 270.00481 * 3 2 1 5 5 C 1.50703 * 109.46808 * 269.99237 * 4 3 2 6 6 H 1.07999 * 120.00409 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99972 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00238 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00206 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47164 * 89.99567 * 9 7 5 11 11 H 1.48494 * 109.47219 * 210.00133 * 9 7 5 12 12 H 1.48505 * 109.46961 * 329.99660 * 9 7 5 13 13 C 1.39028 * 120.00235 * 89.99476 * 3 2 1 14 14 C 1.38823 * 119.66677 * 184.99965 * 13 3 2 15 15 C 1.39131 * 119.00598 * 179.75010 * 14 13 3 16 16 N 1.39196 * 120.82563 * 180.23352 * 15 14 13 17 17 C 1.39694 * 118.35147 * 0.25790 * 15 14 13 18 18 C 1.37738 * 119.23518 * 359.97438 * 17 15 14 19 19 N 1.32088 * 120.93155 * 359.97438 * 18 17 15 20 20 H 1.08996 * 109.47077 * 59.99825 * 1 2 3 21 21 H 1.09001 * 109.46909 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46748 * 300.00062 * 1 2 3 23 23 H 1.09003 * 109.47196 * 239.99820 * 2 1 3 24 24 H 1.08997 * 109.47201 * 119.99635 * 2 1 3 25 25 H 1.08999 * 109.47724 * 29.99485 * 4 3 2 26 26 H 1.09004 * 109.47276 * 149.99697 * 4 3 2 27 27 H 0.97001 * 120.00697 * 180.02562 * 8 7 5 28 28 H 1.08002 * 120.50036 * 0.03377 * 14 13 3 29 29 H 0.97006 * 119.99837 * 0.02562 * 16 15 14 30 30 H 0.96998 * 120.00410 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.38034 * 179.97438 * 17 15 14 32 32 H 1.07992 * 119.53064 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 3.3497 3.1271 -3.6172 9 14 5.9134 2.0962 -3.4172 10 1 5.9761 0.8757 -4.2606 11 1 6.3929 3.2638 -4.1995 12 1 6.7736 1.9155 -2.2202 13 6 2.2501 2.0367 1.2040 14 6 2.6125 3.3767 1.1981 15 6 2.8359 4.0205 2.4112 16 7 3.1960 5.3645 2.4497 17 6 2.6902 3.2845 3.5895 18 6 2.3327 1.9565 3.5133 19 7 2.1267 1.3748 2.3454 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.5817 1.6876 -2.0284 26 1 2.0955 3.1410 -1.1385 27 1 3.6757 3.5176 -4.4432 28 1 2.7149 3.9128 0.2662 29 1 3.2938 5.8643 1.6240 30 1 3.3493 5.8014 3.3020 31 1 2.8561 3.7513 4.5491 32 1 2.2192 1.3829 4.4212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049840473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:02 Heat of formation + Delta-G solvation = 36.627313 kcal Electronic energy + Delta-G solvation = -14926.973595 eV Core-core repulsion = 12501.219854 eV Total energy + Delta-G solvation = -2425.753741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45801 -36.34083 -34.48900 -32.73870 -30.95359 -29.23934 -28.64707 -26.45225 -23.43399 -22.67915 -21.82190 -19.87529 -16.96390 -16.85335 -16.37739 -14.97796 -14.91682 -14.79459 -14.20988 -13.88444 -13.18139 -13.12660 -12.79835 -12.57394 -11.91994 -11.63996 -11.17942 -11.00530 -10.96157 -10.89538 -10.53226 -10.33648 -10.02141 -9.76009 -8.88951 -8.63902 -8.46675 -7.48691 -6.64554 -6.05133 -4.16071 2.17122 2.42493 3.26598 3.33099 3.38233 3.96779 4.28278 4.41750 4.78382 5.21071 5.28399 5.69797 5.80061 5.87078 5.99649 6.07789 6.10474 6.34567 6.42608 6.53823 6.67557 6.78548 6.85946 6.98749 7.28749 7.33227 7.78050 7.84509 8.05684 8.10613 8.19191 8.55218 8.87390 9.13326 9.50920 10.96252 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.009852 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.609888 B = 2841.305912 C = 3591.152155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 N -0.588 5.588 4 C 0.252 3.748 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.448 3.552 14 C -0.307 4.307 15 C 0.276 3.724 16 N -0.872 5.872 17 C -0.326 4.326 18 C 0.174 3.826 19 N -0.589 5.589 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.136 0.864 29 H 0.399 0.601 30 H 0.394 0.606 31 H 0.114 0.886 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 0.849 9.954 10.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.002 3.998 3 N -0.296 5.296 4 C 0.132 3.868 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.212 3.788 14 C -0.337 4.337 15 C 0.164 3.836 16 N -0.411 5.411 17 C -0.355 4.355 18 C 0.015 3.985 19 N -0.311 5.311 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.227 0.773 30 H 0.221 0.779 31 H 0.132 0.868 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.783 -0.073 9.484 9.885 hybrid contribution 1.390 1.238 -0.384 1.901 sum -1.393 1.165 9.101 9.280 Atomic orbital electron populations 1.22139 0.97551 1.00726 1.01629 1.21158 0.92823 0.83675 1.02131 1.47064 1.66253 1.12795 1.03499 1.19318 0.96215 0.92861 0.78357 1.21582 0.97003 1.31793 1.06389 0.92229 1.24944 0.97857 0.94961 0.96283 1.69929 1.35667 1.33525 1.14355 0.86523 0.84690 0.77752 0.78670 1.20569 1.21151 1.19857 1.18074 0.87115 0.87512 0.86068 1.20887 1.19596 0.95802 0.97442 1.17675 0.88453 0.84121 0.93399 1.42318 1.79231 1.08858 1.10661 1.21017 1.20902 0.97143 0.96433 1.21881 0.91013 0.91170 0.94427 1.67222 1.27475 1.39039 0.97330 0.93013 0.92794 0.93001 0.91292 0.90739 0.94811 0.94602 0.92693 0.84661 0.77317 0.77880 0.86830 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.46 6.19 -4.04 -0.03 2.44 16 3 N -0.59 -13.24 2.57 -175.26 -0.45 -13.69 16 4 C 0.25 6.40 5.00 -5.19 -0.03 6.37 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 9 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.45 9.80 7.37 -155.01 -1.14 8.66 16 14 C -0.31 -6.44 9.15 -39.03 -0.36 -6.79 16 15 C 0.28 4.84 6.81 -83.64 -0.57 4.27 16 16 N -0.87 -11.75 9.08 32.51 0.30 -11.46 16 17 C -0.33 -5.26 9.99 -39.22 -0.39 -5.65 16 18 C 0.17 2.95 11.16 -17.62 -0.20 2.75 16 19 N -0.59 -11.85 9.07 -12.53 -0.11 -11.96 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 24 H 0.07 1.43 7.29 -51.93 -0.38 1.05 16 25 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 26 H 0.04 0.95 5.97 -51.93 -0.31 0.64 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.14 3.05 6.02 -52.49 -0.32 2.73 16 29 H 0.40 5.08 8.86 -40.82 -0.36 4.72 16 30 H 0.39 4.12 8.86 -40.82 -0.36 3.76 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 275.44 15.07 4.15 4.15 Total: -1.00 -30.09 275.44 -7.38 -37.47 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.23 Total: 7.50 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.75 Total: -3.59 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.47 Total: -61.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.09 -7.38 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049840473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.096 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds