Wall clock time and date at job start Sun Mar 29 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47305 * 2 1 4 4 O 1.42900 * 109.47479 * 239.98789 * 2 1 3 5 5 C 1.53005 * 109.46693 * 119.99102 * 2 1 3 6 6 N 1.46495 * 109.47026 * 185.00131 * 5 2 1 7 7 C 1.38858 * 120.00153 * 180.02562 * 6 5 2 8 8 C 1.39568 * 119.84082 * 359.72147 * 7 6 5 9 9 C 1.36335 * 120.16002 * 179.72211 * 8 7 6 10 10 C 1.40884 * 119.83949 * 0.55418 * 9 8 7 11 11 C 1.41139 * 120.16079 * 179.69844 * 10 9 8 12 12 H 1.07993 * 120.00282 * 204.62279 * 11 10 9 13 13 C 1.39863 * 119.99667 * 24.62503 * 11 10 9 14 14 N 1.30909 * 120.00290 * 17.96678 * 13 11 10 15 15 Si 1.86797 * 120.00116 * 197.96258 * 13 11 10 16 16 H 1.48507 * 109.47000 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47009 * 120.00024 * 15 13 11 18 18 H 1.48494 * 109.47651 * 240.00071 * 15 13 11 19 19 C 1.40886 * 119.68668 * 359.72237 * 10 9 8 20 20 C 1.36342 * 119.83643 * 359.97438 * 19 10 9 21 21 H 1.09002 * 109.47386 * 300.00986 * 1 2 3 22 22 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46629 * 60.00530 * 1 2 3 24 24 H 0.96703 * 114.00029 * 300.00904 * 4 2 1 25 25 H 1.09001 * 109.47176 * 304.99799 * 5 2 1 26 26 H 1.09000 * 109.47059 * 65.00243 * 5 2 1 27 27 H 0.97002 * 120.00271 * 0.02562 * 6 5 2 28 28 H 1.07996 * 119.91818 * 359.97438 * 8 7 6 29 29 H 1.08007 * 120.08531 * 180.27706 * 9 8 7 30 30 H 0.96998 * 120.00207 * 180.02562 * 14 13 11 31 31 H 1.08006 * 120.08410 * 179.97438 * 19 10 9 32 32 H 1.08004 * 119.91960 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6739 -1.1666 5 6 2.0399 -0.7211 1.2494 6 7 3.4999 -0.6177 1.3112 7 6 4.1933 -1.2003 2.3638 8 6 3.4955 -1.8786 3.3643 9 6 4.1701 -2.4578 4.3977 10 6 5.5742 -2.3605 4.4604 11 6 6.2789 -2.9522 5.5306 12 1 7.2498 -2.5730 5.8131 13 6 5.7198 -4.0297 6.2253 14 7 4.7393 -4.7141 5.6924 15 14 6.3722 -4.4923 7.9134 16 1 7.4733 -3.5691 8.2886 17 1 5.2782 -4.3888 8.9122 18 1 6.8834 -5.8861 7.8817 19 6 6.2715 -1.6693 3.4501 20 6 5.5843 -1.1002 2.4192 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 1.7210 -1.5955 -1.2326 25 1 1.6053 -0.2614 2.1371 26 1 1.7516 -1.7714 1.2059 27 1 3.9823 -0.1423 0.6168 28 1 2.4188 -1.9482 3.3175 29 1 3.6292 -2.9863 5.1689 30 1 4.3513 -5.4612 6.1744 31 1 7.3479 -1.5904 3.4920 32 1 6.1174 -0.5697 1.6441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:13 Heat of formation + Delta-G solvation = -38.705882 kcal Electronic energy + Delta-G solvation = -14402.368637 eV Core-core repulsion = 11941.055453 eV Total energy + Delta-G solvation = -2461.313184 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.39119 -37.33244 -34.63711 -32.89209 -31.09944 -29.43508 -28.67024 -25.91957 -23.74518 -22.07386 -20.74060 -19.94472 -17.18908 -16.65771 -15.95364 -15.88331 -14.96214 -14.55941 -13.84583 -13.66414 -13.13676 -12.80308 -12.57721 -12.31237 -12.06589 -11.94996 -11.63597 -11.22351 -11.02820 -10.86690 -10.77326 -10.44907 -10.02315 -9.67225 -9.27250 -9.21444 -8.51140 -7.47658 -6.62663 -6.36357 -4.01404 2.91767 3.11763 3.16397 3.21977 3.36594 4.06840 4.13898 4.50040 4.77745 4.85321 5.07129 5.14618 5.56096 5.59627 5.84051 5.89885 5.94231 6.16762 6.29768 6.34212 6.95009 6.95545 7.22166 7.37897 7.56195 7.60614 7.71176 7.86805 8.17210 8.31488 8.51789 8.74023 8.83058 9.07962 9.17330 10.39098 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057088 B = 0.005631 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.350970 B = 4971.189042 C = 5287.542194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.091 3.909 3 H 0.100 0.900 4 O -0.562 6.562 5 C 0.108 3.892 6 N -0.757 5.757 7 C 0.092 3.908 8 C -0.166 4.166 9 C -0.125 4.125 10 C 0.073 3.927 11 C -0.467 4.467 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.809 5.809 15 Si 0.902 3.098 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.277 1.277 19 C -0.186 4.186 20 C -0.159 4.159 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.375 0.625 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.387 0.613 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.275 0.725 31 H 0.092 0.908 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 5.061 -6.377 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.032 3.968 3 H 0.118 0.882 4 O -0.368 6.368 5 C -0.018 4.018 6 N -0.394 5.394 7 C -0.005 4.005 8 C -0.188 4.188 9 C -0.145 4.145 10 C 0.070 3.930 11 C -0.498 4.498 12 H 0.091 0.909 13 C -0.140 4.140 14 N -0.437 5.437 15 Si 0.727 3.273 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.203 1.203 19 C -0.206 4.206 20 C -0.181 4.181 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.223 0.777 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.063 5.375 -6.363 10.921 hybrid contribution 0.080 -0.745 0.696 1.023 sum -6.983 4.629 -5.668 10.115 Atomic orbital electron populations 1.22425 0.96003 1.02771 1.02782 1.22143 0.92979 0.96966 0.84691 0.88244 1.86558 1.77433 1.29134 1.43676 1.21717 0.83742 0.99386 0.96960 1.43765 1.03520 1.64496 1.27579 1.17380 0.90810 1.01432 0.90918 1.20079 0.97110 1.04378 0.97187 1.20928 0.94484 1.00880 0.98170 1.17502 0.91770 0.91843 0.91869 1.19400 1.04150 1.13120 1.13134 0.90897 1.25793 0.94320 0.95211 0.98719 1.69869 1.22067 1.15321 1.36396 0.86371 0.79691 0.78670 0.82551 1.18619 1.19985 1.20280 1.20557 0.97447 1.06512 0.96077 1.19821 0.91813 1.06170 1.00307 0.91344 0.92093 0.91756 0.77731 0.92821 0.93351 0.77970 0.89562 0.86403 0.91417 0.89021 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.53 37.16 0.35 -1.30 16 2 C 0.09 1.06 3.62 -26.73 -0.10 0.96 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 4 O -0.56 -6.99 13.29 -35.23 -0.47 -7.46 16 5 C 0.11 1.59 4.53 -4.04 -0.02 1.57 16 6 N -0.76 -13.66 5.65 -58.50 -0.33 -13.99 16 7 C 0.09 2.06 6.67 -83.69 -0.56 1.50 16 8 C -0.17 -3.95 9.23 -39.77 -0.37 -4.32 16 9 C -0.12 -3.32 8.64 -39.27 -0.34 -3.66 16 10 C 0.07 2.01 5.57 -106.79 -0.60 1.42 16 11 C -0.47 -12.87 9.03 -37.87 -0.34 -13.21 16 12 H 0.07 1.94 7.91 -52.49 -0.41 1.53 16 13 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 14 N -0.81 -21.73 10.96 55.54 0.61 -21.12 16 15 Si 0.90 19.39 29.60 -169.99 -5.03 14.36 16 16 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 C -0.19 -4.71 9.74 -39.26 -0.38 -5.09 16 20 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.38 3.60 9.05 45.56 0.41 4.01 16 25 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 26 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 27 H 0.39 6.54 8.47 -40.82 -0.35 6.19 16 28 H 0.09 1.87 6.68 -52.49 -0.35 1.52 16 29 H 0.12 3.25 6.16 -52.48 -0.32 2.92 16 30 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 31 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 32 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 273.42 15.07 4.12 4.12 Total: -1.00 -29.53 273.42 -7.44 -36.97 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -3.52 Total: 11.47 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -2.82 Total: -24.36 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.28 Total: -35.11 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.47 Total: -7.46 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.53 -7.44 -36.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.737 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds