Wall clock time and date at job start Sun Mar 29 2020 22:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47305 * 2 1 4 4 O 1.42900 * 109.47479 * 239.98789 * 2 1 3 5 5 C 1.53005 * 109.46693 * 119.99102 * 2 1 3 6 6 N 1.46495 * 109.47026 * 185.00131 * 5 2 1 7 7 C 1.38858 * 120.00153 * 180.02562 * 6 5 2 8 8 C 1.39568 * 119.84082 * 359.72147 * 7 6 5 9 9 C 1.36335 * 120.16002 * 179.72211 * 8 7 6 10 10 C 1.40884 * 119.83949 * 0.55418 * 9 8 7 11 11 C 1.41139 * 120.16079 * 179.69844 * 10 9 8 12 12 H 1.07993 * 120.00282 * 204.62279 * 11 10 9 13 13 C 1.39863 * 119.99667 * 24.62503 * 11 10 9 14 14 N 1.30909 * 120.00290 * 17.96678 * 13 11 10 15 15 Si 1.86797 * 120.00116 * 197.96258 * 13 11 10 16 16 H 1.48507 * 109.47000 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47009 * 120.00024 * 15 13 11 18 18 H 1.48494 * 109.47651 * 240.00071 * 15 13 11 19 19 C 1.40886 * 119.68668 * 359.72237 * 10 9 8 20 20 C 1.36342 * 119.83643 * 359.97438 * 19 10 9 21 21 H 1.09002 * 109.47386 * 300.00986 * 1 2 3 22 22 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46629 * 60.00530 * 1 2 3 24 24 H 0.96703 * 114.00029 * 300.00904 * 4 2 1 25 25 H 1.09001 * 109.47176 * 304.99799 * 5 2 1 26 26 H 1.09000 * 109.47059 * 65.00243 * 5 2 1 27 27 H 0.97002 * 120.00271 * 0.02562 * 6 5 2 28 28 H 1.07996 * 119.91818 * 359.97438 * 8 7 6 29 29 H 1.08007 * 120.08531 * 180.27706 * 9 8 7 30 30 H 0.96998 * 120.00207 * 180.02562 * 14 13 11 31 31 H 1.08006 * 120.08410 * 179.97438 * 19 10 9 32 32 H 1.08004 * 119.91960 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6739 -1.1666 5 6 2.0399 -0.7211 1.2494 6 7 3.4999 -0.6177 1.3112 7 6 4.1933 -1.2003 2.3638 8 6 3.4955 -1.8786 3.3643 9 6 4.1701 -2.4578 4.3977 10 6 5.5742 -2.3605 4.4604 11 6 6.2789 -2.9522 5.5306 12 1 7.2498 -2.5730 5.8131 13 6 5.7198 -4.0297 6.2253 14 7 4.7393 -4.7141 5.6924 15 14 6.3722 -4.4923 7.9134 16 1 7.4733 -3.5691 8.2886 17 1 5.2782 -4.3888 8.9122 18 1 6.8834 -5.8861 7.8817 19 6 6.2715 -1.6693 3.4501 20 6 5.5843 -1.1002 2.4192 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 1.7210 -1.5955 -1.2326 25 1 1.6053 -0.2614 2.1371 26 1 1.7516 -1.7714 1.2059 27 1 3.9823 -0.1423 0.6168 28 1 2.4188 -1.9482 3.3175 29 1 3.6292 -2.9863 5.1689 30 1 4.3513 -5.4612 6.1744 31 1 7.3479 -1.5904 3.4920 32 1 6.1174 -0.5697 1.6441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:12 Heat of formation + Delta-G solvation = -59.076306 kcal Electronic energy + Delta-G solvation = -14403.251965 eV Core-core repulsion = 11941.055453 eV Total energy + Delta-G solvation = -2462.196512 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92950 -38.67405 -36.29173 -34.62346 -32.22052 -31.35492 -30.36332 -27.38760 -25.44067 -23.41974 -22.33863 -21.71423 -19.16055 -18.00363 -17.37527 -16.90770 -16.77943 -16.00894 -15.54552 -14.91688 -14.48215 -14.39219 -14.26971 -13.80417 -13.57843 -13.22559 -13.08657 -12.75211 -12.73779 -12.52329 -12.26933 -11.78116 -11.57549 -11.18287 -11.08648 -11.00231 -10.30833 -9.42029 -8.55618 -8.17020 -6.01279 1.09407 1.17217 1.40535 1.54845 1.57976 2.27781 2.82332 2.86562 3.53944 3.82610 3.85507 4.15035 4.26653 4.43475 4.49624 4.64883 4.74901 4.87628 5.02532 5.13312 5.16844 5.25418 5.29210 5.45190 5.68225 5.78974 5.95325 6.18224 6.38449 6.66420 6.78638 6.87090 7.07991 7.14358 7.30447 8.48234 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057088 B = 0.005631 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.350970 B = 4971.189042 C = 5287.542194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 H 0.102 0.898 4 O -0.576 6.576 5 C 0.103 3.897 6 N -0.749 5.749 7 C 0.109 3.891 8 C -0.175 4.175 9 C -0.144 4.144 10 C 0.034 3.966 11 C -0.506 4.506 12 H 0.068 0.932 13 C 0.032 3.968 14 N -0.843 5.843 15 Si 0.977 3.023 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.268 1.268 19 C -0.196 4.196 20 C -0.167 4.167 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.387 0.613 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.396 0.604 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.282 0.718 31 H 0.097 0.903 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.822 5.696 -7.120 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.042 3.958 3 H 0.120 0.880 4 O -0.384 6.384 5 C -0.023 4.023 6 N -0.384 5.384 7 C 0.010 3.990 8 C -0.197 4.197 9 C -0.164 4.164 10 C 0.031 3.969 11 C -0.537 4.537 12 H 0.086 0.914 13 C -0.180 4.180 14 N -0.471 5.471 15 Si 0.799 3.201 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.193 1.193 19 C -0.216 4.216 20 C -0.190 4.190 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.236 0.764 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.230 0.770 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.891 6.027 -7.152 12.237 hybrid contribution 0.262 -0.862 0.748 1.171 sum -7.629 5.165 -6.404 11.220 Atomic orbital electron populations 1.22367 0.93810 1.03532 1.03635 1.22076 0.94509 0.96366 0.82831 0.88030 1.86535 1.77884 1.30240 1.43732 1.21962 0.81534 0.99860 0.98899 1.43856 1.05047 1.63265 1.26237 1.17505 0.90921 0.99551 0.91069 1.20239 0.98166 1.04369 0.96920 1.20872 0.94446 1.02049 0.99012 1.17835 0.92513 0.93460 0.93081 1.19623 1.04662 1.14605 1.14849 0.91416 1.26618 0.94490 0.94568 1.02288 1.69925 1.23287 1.15918 1.37988 0.85240 0.79119 0.78481 0.77282 1.18443 1.19060 1.19313 1.20766 0.97984 1.06463 0.96357 1.20117 0.92430 1.06042 1.00379 0.90623 0.91437 0.90774 0.76385 0.92639 0.93541 0.76966 0.87618 0.88203 0.90727 0.88495 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 9.53 71.98 0.69 -1.96 16 2 C 0.10 2.06 3.62 30.60 0.11 2.17 16 3 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 4 O -0.58 -12.73 13.29 -148.98 -1.98 -14.71 16 5 C 0.10 2.76 4.53 86.38 0.39 3.15 16 6 N -0.75 -25.19 5.65 -338.99 -1.91 -27.11 16 7 C 0.11 4.74 6.67 38.67 0.26 5.00 16 8 C -0.17 -8.29 9.23 22.15 0.20 -8.08 16 9 C -0.14 -7.86 8.64 22.47 0.19 -7.67 16 10 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 11 C -0.51 -28.85 9.03 23.38 0.21 -28.64 16 12 H 0.07 3.75 7.91 -2.91 -0.02 3.73 16 13 C 0.03 1.71 5.13 85.22 0.44 2.14 16 14 N -0.84 -46.40 10.96 21.82 0.24 -46.17 16 15 Si 0.98 40.36 29.60 68.60 2.03 42.39 16 16 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 17 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 19 C -0.20 -10.02 9.74 22.48 0.22 -9.80 16 20 C -0.17 -7.57 9.82 22.15 0.22 -7.35 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.39 6.41 9.05 -74.06 -0.67 5.74 16 25 H 0.06 1.51 7.92 -2.39 -0.02 1.49 16 26 H 0.05 1.30 7.94 -2.39 -0.02 1.28 16 27 H 0.40 12.21 8.47 -92.71 -0.79 11.42 16 28 H 0.11 4.48 6.68 -2.91 -0.02 4.46 16 29 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 30 H 0.28 14.06 8.30 -92.71 -0.77 13.29 16 31 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -63.99 273.42 0.86 -63.13 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: -0.33 Total: 31.71 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 2.81 Total: -49.24 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -1.67 Total: -73.27 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.98 Total: -14.71 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -63.99 0.86 -63.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.050 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds