Wall clock time and date at job start Sun Mar 29 2020 22:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.47234 * 2 1 4 4 C 1.46900 * 110.99763 * 304.00528 * 3 2 1 5 5 C 1.50707 * 109.46925 * 293.95485 * 4 3 2 6 6 H 1.07998 * 120.00335 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99758 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00233 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46964 * 89.99679 * 9 7 5 11 11 H 1.48497 * 109.47137 * 210.00031 * 9 7 5 12 12 H 1.48505 * 109.46751 * 330.00271 * 9 7 5 13 13 C 1.46896 * 111.00216 * 67.95989 * 3 2 1 14 14 C 1.50701 * 109.47307 * 75.54212 * 13 3 2 15 15 N 1.31797 * 119.12239 * 266.02047 * 14 13 3 16 16 C 1.32333 * 120.81448 * 179.75859 * 15 14 13 17 17 C 1.38603 * 119.10480 * 0.50808 * 16 15 14 18 18 C 1.38596 * 118.40010 * 359.74963 * 17 16 15 19 19 N 1.31793 * 119.12073 * 86.29480 * 14 13 3 20 20 H 1.09005 * 109.46779 * 303.09386 * 1 2 3 21 21 H 1.08997 * 109.47075 * 63.09371 * 1 2 3 22 22 H 1.08994 * 109.47007 * 183.09882 * 1 2 3 23 23 H 1.08998 * 109.46862 * 239.99509 * 2 1 3 24 24 H 1.09001 * 109.46548 * 119.99686 * 2 1 3 25 25 H 1.09003 * 109.47312 * 53.95156 * 4 3 2 26 26 H 1.09000 * 109.47507 * 173.95763 * 4 3 2 27 27 H 0.97002 * 120.00294 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46982 * 195.54532 * 13 3 2 29 29 H 1.09006 * 109.46960 * 315.53978 * 13 3 2 30 30 H 1.08002 * 120.44676 * 180.23758 * 16 15 14 31 31 H 1.07999 * 120.79840 * 179.77075 * 17 16 15 32 32 H 1.07991 * 120.44771 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4721 2.1369 -1.1369 5 6 2.0111 1.5660 -2.4233 6 1 2.6921 0.7281 -2.3987 7 6 1.6350 2.1134 -3.6315 8 7 0.8062 3.1340 -3.6615 9 14 2.3036 1.4062 -5.2260 10 1 1.3967 0.3351 -5.7112 11 1 2.3904 2.4815 -6.2464 12 1 3.6555 0.8396 -4.9876 13 6 1.7101 2.0529 1.2712 14 6 2.6511 1.5599 2.3400 15 7 2.2784 0.5573 3.1101 16 6 3.0800 0.0946 4.0559 17 6 4.3205 0.6858 4.2370 18 6 4.6748 1.7409 3.4111 19 7 3.8227 2.1463 2.4833 20 1 -0.3633 0.5612 0.8610 21 1 -0.3633 0.4650 -0.9164 22 1 -0.3633 -1.0261 0.0556 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.3847 2.0606 -1.1331 26 1 1.7632 3.1841 -1.0541 27 1 0.5418 3.5194 -4.5115 28 1 1.8265 3.1302 1.1533 29 1 0.6831 1.8277 1.5591 30 1 2.7701 -0.7297 4.6811 31 1 4.9949 0.3325 5.0030 32 1 5.6334 2.2255 3.5230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054459889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:47 Heat of formation + Delta-G solvation = 56.764296 kcal Electronic energy + Delta-G solvation = -14815.528375 eV Core-core repulsion = 12390.647839 eV Total energy + Delta-G solvation = -2424.880535 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80418 -37.14708 -33.50370 -32.81663 -32.05885 -29.40956 -27.75454 -25.21428 -24.36458 -23.23969 -22.23052 -19.41722 -17.33291 -16.74587 -16.11164 -15.30712 -15.13478 -14.87064 -14.28518 -13.80217 -13.42295 -13.37482 -12.74415 -12.13012 -11.74052 -11.44903 -11.09401 -10.87938 -10.79261 -10.69446 -10.59393 -10.45344 -9.96798 -9.74985 -9.41498 -9.13610 -9.00925 -8.39280 -7.18534 -5.98530 -3.98876 1.05313 1.26848 3.34788 3.40887 3.45704 3.90102 4.20243 4.35548 4.48090 4.68024 5.06242 5.19069 5.20327 5.37750 5.56900 5.70943 5.90375 5.99618 6.07822 6.18768 6.27141 6.51772 6.61030 6.77530 7.00180 7.19470 7.33702 7.45100 7.83461 8.11318 8.22051 8.37713 8.56962 9.07939 9.64567 11.12348 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042415 B = 0.006727 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.983861 B = 4161.056943 C = 4361.033070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.062 3.938 3 N -0.527 5.527 4 C 0.191 3.809 5 C -0.502 4.502 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.111 3.889 14 C 0.346 3.654 15 N -0.517 5.517 16 C 0.143 3.857 17 C -0.245 4.245 18 C 0.146 3.854 19 N -0.500 5.500 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.004 0.996 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 -4.836 14.435 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.067 4.067 3 N -0.251 5.251 4 C 0.066 3.934 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.019 4.019 14 C 0.079 3.921 15 N -0.231 5.231 16 C -0.024 4.024 17 C -0.268 4.268 18 C -0.021 4.021 19 N -0.214 5.214 20 H 0.065 0.935 21 H 0.090 0.910 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.180 0.820 31 H 0.159 0.841 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.737 -4.372 13.529 14.701 hybrid contribution 0.173 -0.691 -0.056 0.714 sum 3.910 -5.063 13.473 14.915 Atomic orbital electron populations 1.22326 0.98954 1.00762 1.02217 1.21974 0.92620 0.90985 1.01075 1.62245 1.59739 1.02298 1.00828 1.19845 0.93703 0.93430 0.86413 1.21117 1.27052 1.16018 0.89895 0.92033 1.24956 0.95330 0.95122 0.99141 1.69953 1.34279 1.23657 1.26000 0.86520 0.79394 0.78558 0.83084 1.20794 1.21281 1.19860 1.20846 0.93573 0.99386 0.88114 1.23448 0.89930 0.86653 0.92075 1.68345 1.36210 1.12707 1.05866 1.23180 0.89800 0.96541 0.92830 1.22821 0.99798 1.00503 1.03652 1.23262 0.98258 0.91993 0.88591 1.68346 1.03632 1.30585 1.18836 0.93526 0.91045 0.93581 0.90494 0.92866 0.97856 0.95119 0.92974 0.88938 0.92343 0.82038 0.84070 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 9.19 37.16 0.34 -3.17 16 2 C 0.06 1.28 5.73 -3.82 -0.02 1.25 16 3 N -0.53 -11.85 4.62 -237.51 -1.10 -12.95 16 4 C 0.19 4.98 4.38 -4.97 -0.02 4.96 16 5 C -0.50 -14.23 8.57 -34.44 -0.30 -14.52 16 6 H 0.06 1.75 7.10 -52.49 -0.37 1.38 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.11 2.17 5.33 -4.98 -0.03 2.14 16 14 C 0.35 6.24 6.65 -157.19 -1.05 5.19 16 15 N -0.52 -8.36 9.51 -10.72 -0.10 -8.46 16 16 C 0.14 1.74 11.30 -17.20 -0.19 1.55 16 17 C -0.25 -2.62 10.17 -39.31 -0.40 -3.02 16 18 C 0.15 1.87 11.31 -17.20 -0.19 1.68 16 19 N -0.50 -8.68 10.33 -10.73 -0.11 -8.79 16 20 H 0.05 0.84 6.26 -51.93 -0.32 0.52 16 21 H 0.07 1.54 6.39 -51.93 -0.33 1.21 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.08 1.69 6.97 -51.93 -0.36 1.33 16 24 H 0.05 1.04 6.80 -51.93 -0.35 0.68 16 25 H 0.00 0.10 5.97 -51.93 -0.31 -0.21 16 26 H 0.03 0.86 7.83 -51.93 -0.41 0.45 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.09 1.82 7.74 -51.93 -0.40 1.41 16 29 H 0.06 1.09 6.01 -51.93 -0.31 0.78 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -31.88 268.39 -7.51 -39.38 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.00 Total: -1.65 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.96 Total: -2.45 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.57 Total: -56.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.88 -7.51 -39.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054459889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.146 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds