Wall clock time and date at job start Sun Mar 29 2020 22:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.47234 * 2 1 4 4 C 1.46900 * 110.99763 * 304.00528 * 3 2 1 5 5 C 1.50707 * 109.46925 * 293.95485 * 4 3 2 6 6 H 1.07998 * 120.00335 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99758 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00233 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46964 * 89.99679 * 9 7 5 11 11 H 1.48497 * 109.47137 * 210.00031 * 9 7 5 12 12 H 1.48505 * 109.46751 * 330.00271 * 9 7 5 13 13 C 1.46896 * 111.00216 * 67.95989 * 3 2 1 14 14 C 1.50701 * 109.47307 * 75.54212 * 13 3 2 15 15 N 1.31797 * 119.12239 * 266.02047 * 14 13 3 16 16 C 1.32333 * 120.81448 * 179.75859 * 15 14 13 17 17 C 1.38603 * 119.10480 * 0.50808 * 16 15 14 18 18 C 1.38596 * 118.40010 * 359.74963 * 17 16 15 19 19 N 1.31793 * 119.12073 * 86.29480 * 14 13 3 20 20 H 1.09005 * 109.46779 * 303.09386 * 1 2 3 21 21 H 1.08997 * 109.47075 * 63.09371 * 1 2 3 22 22 H 1.08994 * 109.47007 * 183.09882 * 1 2 3 23 23 H 1.08998 * 109.46862 * 239.99509 * 2 1 3 24 24 H 1.09001 * 109.46548 * 119.99686 * 2 1 3 25 25 H 1.09003 * 109.47312 * 53.95156 * 4 3 2 26 26 H 1.09000 * 109.47507 * 173.95763 * 4 3 2 27 27 H 0.97002 * 120.00294 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46982 * 195.54532 * 13 3 2 29 29 H 1.09006 * 109.46960 * 315.53978 * 13 3 2 30 30 H 1.08002 * 120.44676 * 180.23758 * 16 15 14 31 31 H 1.07999 * 120.79840 * 179.77075 * 17 16 15 32 32 H 1.07991 * 120.44771 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4721 2.1369 -1.1369 5 6 2.0111 1.5660 -2.4233 6 1 2.6921 0.7281 -2.3987 7 6 1.6350 2.1134 -3.6315 8 7 0.8062 3.1340 -3.6615 9 14 2.3036 1.4062 -5.2260 10 1 1.3967 0.3351 -5.7112 11 1 2.3904 2.4815 -6.2464 12 1 3.6555 0.8396 -4.9876 13 6 1.7101 2.0529 1.2712 14 6 2.6511 1.5599 2.3400 15 7 2.2784 0.5573 3.1101 16 6 3.0800 0.0946 4.0559 17 6 4.3205 0.6858 4.2370 18 6 4.6748 1.7409 3.4111 19 7 3.8227 2.1463 2.4833 20 1 -0.3633 0.5612 0.8610 21 1 -0.3633 0.4650 -0.9164 22 1 -0.3633 -1.0261 0.0556 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.3847 2.0606 -1.1331 26 1 1.7632 3.1841 -1.0541 27 1 0.5418 3.5194 -4.5115 28 1 1.8265 3.1302 1.1533 29 1 0.6831 1.8277 1.5591 30 1 2.7701 -0.7297 4.6811 31 1 4.9949 0.3325 5.0030 32 1 5.6334 2.2255 3.5230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054459889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:47 Heat of formation + Delta-G solvation = 34.104346 kcal Electronic energy + Delta-G solvation = -14816.510984 eV Core-core repulsion = 12390.647839 eV Total energy + Delta-G solvation = -2425.863145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.90999 -38.86344 -34.81793 -34.59558 -33.39716 -31.06012 -29.56058 -26.90847 -25.40454 -25.04410 -23.65534 -21.13697 -18.47223 -18.41555 -17.63977 -16.95620 -16.64406 -16.12444 -16.04833 -15.25035 -14.87496 -14.54677 -14.30563 -13.96140 -13.41160 -13.11136 -12.94689 -12.71695 -12.53834 -12.49057 -11.94479 -11.83774 -11.68809 -11.50685 -11.24427 -10.59519 -10.40103 -10.11244 -8.98809 -8.17863 -6.26829 -0.00716 0.27999 1.40976 1.42529 1.53947 2.40948 2.74371 3.03607 3.14684 3.31955 3.57579 3.83987 4.17416 4.25242 4.31222 4.34104 4.45038 4.50969 4.67056 4.70739 4.92956 4.98514 4.99666 5.23040 5.35042 5.47782 5.53541 5.67538 6.05915 6.18027 6.33821 6.58539 6.87329 7.25351 7.41673 8.93108 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042415 B = 0.006727 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.983861 B = 4161.056943 C = 4361.033070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.068 3.932 3 N -0.537 5.537 4 C 0.207 3.793 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.116 3.884 14 C 0.321 3.679 15 N -0.536 5.536 16 C 0.133 3.867 17 C -0.217 4.217 18 C 0.130 3.870 19 N -0.539 5.539 20 H 0.054 0.946 21 H 0.039 0.961 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.069 0.931 25 H -0.013 1.013 26 H 0.000 1.000 27 H 0.264 0.736 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.203 0.797 31 H 0.191 0.809 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 -6.632 15.919 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.060 4.060 3 N -0.262 5.262 4 C 0.082 3.918 5 C -0.557 4.557 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.573 5.573 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.194 1.194 13 C -0.014 4.014 14 C 0.053 3.947 15 N -0.251 5.251 16 C -0.032 4.032 17 C -0.238 4.238 18 C -0.035 4.035 19 N -0.254 5.254 20 H 0.072 0.928 21 H 0.059 0.941 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.005 0.995 26 H 0.018 0.982 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.219 0.781 31 H 0.208 0.792 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.076 -6.183 15.047 17.041 hybrid contribution -0.165 -0.158 -0.337 0.407 sum 4.911 -6.341 14.711 16.755 Atomic orbital electron populations 1.22187 0.97769 1.02243 1.00873 1.21913 0.93547 0.89768 1.00816 1.62099 1.59944 1.02982 1.01154 1.19463 0.92552 0.92145 0.87671 1.21376 1.27125 1.16037 0.91163 0.92539 1.25837 0.95446 0.95352 1.02741 1.70075 1.35331 1.24830 1.27074 0.85427 0.78873 0.78037 0.78536 1.19683 1.20638 1.19353 1.20695 0.94722 0.98437 0.87524 1.22811 0.90355 0.88538 0.92979 1.68258 1.37548 1.12440 1.06903 1.23956 0.90031 0.97211 0.92025 1.23316 0.99464 0.98153 1.02863 1.23924 0.98710 0.92932 0.87960 1.68233 1.04201 1.31883 1.21112 0.92751 0.94150 0.90843 0.92323 0.91271 0.99523 0.98173 0.92693 0.90461 0.92021 0.78063 0.79192 0.78757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.60 9.19 71.98 0.66 -5.94 16 2 C 0.07 2.82 5.73 86.31 0.49 3.31 16 3 N -0.54 -25.05 4.62 -905.34 -4.18 -29.24 16 4 C 0.21 11.40 4.38 85.56 0.37 11.77 16 5 C -0.52 -30.26 8.57 25.60 0.22 -30.04 16 6 H 0.06 3.28 7.10 -2.91 -0.02 3.26 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 9 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 C 0.12 4.72 5.33 85.56 0.46 5.17 16 14 C 0.32 11.55 6.65 138.75 0.92 12.47 16 15 N -0.54 -16.51 9.51 -187.84 -1.79 -18.29 16 16 C 0.13 2.77 11.30 84.70 0.96 3.72 16 17 C -0.22 -3.68 10.17 22.44 0.23 -3.45 16 18 C 0.13 3.00 11.31 84.70 0.96 3.96 16 19 N -0.54 -18.50 10.33 -187.85 -1.94 -20.44 16 20 H 0.05 1.97 6.26 -2.38 -0.01 1.96 16 21 H 0.04 1.79 6.39 -2.39 -0.02 1.77 16 22 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.06 2.62 6.97 -2.39 -0.02 2.61 16 24 H 0.07 2.66 6.80 -2.39 -0.02 2.64 16 25 H -0.01 -0.74 5.97 -2.39 -0.01 -0.75 16 26 H 0.00 0.01 7.83 -2.39 -0.02 -0.01 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.08 3.26 7.74 -2.39 -0.02 3.24 16 29 H 0.06 2.39 6.01 -2.38 -0.01 2.38 16 30 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.20 3.00 8.06 -2.92 -0.02 2.97 16 Total: -1.00 -71.46 268.39 1.24 -70.22 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.11 Total: 5.28 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.73 Total: 1.68 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -7.63 Total: -124.54 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.46 1.24 -70.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054459889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.323 kcal (2) G-P(sol) polarization free energy of solvation -71.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds