Wall clock time and date at job start Sun Mar 29 2020 22:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 H 1.08995 * 109.46758 * 185.16263 * 3 2 1 5 5 C 1.50696 * 109.47046 * 305.16215 * 3 2 1 6 6 H 1.08001 * 119.99797 * 120.00090 * 5 3 2 7 7 C 1.37877 * 120.00376 * 299.99783 * 5 3 2 8 8 N 1.31518 * 119.99672 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00269 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47236 * 90.00284 * 9 7 5 11 11 H 1.48502 * 109.47111 * 210.00144 * 9 7 5 12 12 H 1.48497 * 109.47202 * 330.00047 * 9 7 5 13 13 N 1.46896 * 109.47132 * 65.16418 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89597 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.38389 * 120.00038 * 94.99917 * 15 14 13 17 17 N 1.32128 * 120.00157 * 179.97438 * 16 15 14 18 18 C 1.32157 * 119.99679 * 0.02562 * 17 16 15 19 19 C 1.38343 * 119.99923 * 359.97438 * 18 17 16 20 20 N 1.32118 * 120.00442 * 274.72639 * 15 14 13 21 21 H 1.09001 * 109.46644 * 294.85018 * 1 2 3 22 22 H 1.08999 * 109.47164 * 174.85166 * 1 2 3 23 23 H 1.08994 * 109.47131 * 54.84587 * 1 2 3 24 24 H 1.08999 * 109.47228 * 120.00301 * 2 1 3 25 25 H 1.09002 * 109.46913 * 240.00017 * 2 1 3 26 26 H 0.97001 * 120.00263 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99920 * 321.94239 * 13 3 2 28 28 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 29 29 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 30 30 H 1.08001 * 120.00299 * 359.96098 * 16 15 14 31 31 H 1.07996 * 119.99922 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.99628 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4438 -0.0925 5 6 1.4361 2.1888 -1.1615 6 1 0.8269 3.0628 -0.9838 7 6 1.6611 1.7560 -2.4511 8 7 2.4025 0.6915 -2.6675 9 14 0.9130 2.6816 -3.8909 10 1 1.8551 3.7358 -4.3450 11 1 0.6535 1.7360 -5.0061 12 1 -0.3643 3.3087 -3.4663 13 7 1.6548 2.0981 1.2569 14 6 2.6433 1.8366 2.3116 15 6 2.2833 2.6252 3.5443 16 6 1.5411 2.0341 4.5517 17 7 1.2259 2.7254 5.6326 18 6 1.6189 3.9815 5.7515 19 6 2.3608 4.5724 4.7444 20 7 2.6807 3.8794 3.6657 21 1 -0.3633 0.4319 0.9325 22 1 -0.3633 -1.0235 -0.0922 23 1 -0.3633 0.5917 -0.8402 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.5606 0.3868 -3.5747 27 1 0.7322 1.8104 1.5467 28 1 2.6482 0.7729 2.5493 29 1 3.6324 2.1359 1.9648 30 1 1.2194 1.0077 4.4542 31 1 1.3616 4.5465 6.6353 32 1 2.6823 5.5989 4.8418 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054766807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:22 Heat of formation + Delta-G solvation = 43.967550 kcal Electronic energy + Delta-G solvation = -14684.042212 eV Core-core repulsion = 12258.606768 eV Total energy + Delta-G solvation = -2425.435444 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.89112 -36.68054 -34.24394 -33.09676 -31.52371 -30.02096 -26.92694 -25.12368 -24.41278 -23.26479 -22.02784 -19.35802 -17.44007 -16.91453 -16.38998 -15.47711 -15.03289 -14.66341 -14.32197 -13.67982 -13.25679 -12.89452 -12.51515 -12.31416 -11.91654 -11.69388 -11.37768 -11.01240 -10.91060 -10.74908 -10.53165 -10.01665 -9.89540 -9.60549 -9.16108 -9.04748 -8.83785 -8.34574 -7.29725 -5.98079 -3.99301 0.88634 1.28143 3.33607 3.40031 3.43968 3.81161 4.19360 4.38005 4.45509 4.61372 4.91330 5.24942 5.33816 5.39836 5.52360 5.56735 5.93279 6.16895 6.31332 6.34382 6.48388 6.54368 6.85262 7.21754 7.23150 7.40972 7.49391 7.66300 7.87217 7.95166 8.24250 8.46531 8.57154 9.05918 9.64119 11.09035 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.006550 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.037029 B = 4274.017809 C = 4584.875237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.674 5.674 14 C 0.107 3.893 15 C 0.105 3.895 16 C 0.047 3.953 17 N -0.441 5.441 18 C 0.030 3.970 19 C 0.051 3.949 20 N -0.420 5.420 21 H 0.026 0.974 22 H 0.024 0.976 23 H 0.069 0.931 24 H 0.012 0.988 25 H 0.094 0.906 26 H 0.259 0.741 27 H 0.327 0.673 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 2.289 12.556 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.305 5.305 14 C -0.024 4.024 15 C -0.036 4.036 16 C -0.114 4.114 17 N -0.155 5.155 18 C -0.130 4.130 19 C -0.109 4.109 20 N -0.135 5.135 21 H 0.045 0.955 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.030 0.970 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.183 0.817 31 H 0.182 0.818 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.500 2.784 12.218 12.541 hybrid contribution -0.596 -0.437 -0.564 0.929 sum -1.096 2.347 11.654 11.939 Atomic orbital electron populations 1.21606 0.97640 0.98769 1.00798 1.22130 0.95071 1.00986 1.00421 1.19260 0.96217 0.88585 0.84992 0.94643 1.21039 1.30564 1.11471 0.89574 0.92023 1.24900 0.95556 0.95162 0.98707 1.69876 1.39062 1.23941 1.20733 0.86555 0.79600 0.79531 0.82061 1.20784 1.21447 1.19982 1.60799 1.03236 1.63480 1.03024 1.20797 0.98982 0.94453 0.88177 1.22527 0.93188 0.91389 0.96474 1.23626 0.96140 1.01316 0.90277 1.68398 1.17222 1.07227 1.22690 1.23667 0.96701 0.92384 1.00225 1.23814 0.95754 1.01158 0.90193 1.68377 1.17647 1.06364 1.21137 0.95471 0.95665 0.91167 0.96975 0.88720 0.93090 0.85549 0.94117 0.89436 0.81747 0.81832 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.40 37.16 0.35 -2.36 16 2 C -0.15 -3.31 5.51 -26.73 -0.15 -3.46 16 3 C 0.22 5.24 2.33 -68.87 -0.16 5.08 16 4 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 5 C -0.49 -13.11 7.25 -34.44 -0.25 -13.36 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -24.99 11.38 55.43 0.63 -24.36 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -14.07 6.19 -109.23 -0.68 -14.75 16 14 C 0.11 1.88 5.84 -4.98 -0.03 1.85 16 15 C 0.11 1.70 6.34 -82.42 -0.52 1.18 16 16 C 0.05 0.67 10.86 -17.37 -0.19 0.48 16 17 N -0.44 -6.16 10.50 -13.06 -0.14 -6.30 16 18 C 0.03 0.35 11.22 -17.37 -0.20 0.16 16 19 C 0.05 0.64 11.22 -17.37 -0.20 0.45 16 20 N -0.42 -6.90 10.42 -9.29 -0.10 -7.00 16 21 H 0.03 0.50 6.63 -51.93 -0.34 0.15 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.07 1.61 6.85 -51.93 -0.36 1.26 16 24 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16 25 H 0.09 2.42 6.22 -51.93 -0.32 2.10 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.33 6.50 6.69 -39.29 -0.26 6.24 16 28 H 0.04 0.65 7.45 -51.93 -0.39 0.27 16 29 H 0.09 1.64 7.93 -51.93 -0.41 1.23 16 30 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 270.04 15.07 4.07 4.07 Total: -1.00 -29.57 270.04 -6.77 -36.35 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.11 Total: 4.21 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.43 Total: -8.53 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.28 Total: -52.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.57 -6.77 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054766807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.316 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds