Wall clock time and date at job start Sun Mar 29 2020 22:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 H 1.08995 * 109.46758 * 185.16263 * 3 2 1 5 5 C 1.50696 * 109.47046 * 305.16215 * 3 2 1 6 6 H 1.08001 * 119.99797 * 120.00090 * 5 3 2 7 7 C 1.37877 * 120.00376 * 299.99783 * 5 3 2 8 8 N 1.31518 * 119.99672 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00269 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47236 * 90.00284 * 9 7 5 11 11 H 1.48502 * 109.47111 * 210.00144 * 9 7 5 12 12 H 1.48497 * 109.47202 * 330.00047 * 9 7 5 13 13 N 1.46896 * 109.47132 * 65.16418 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89597 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.38389 * 120.00038 * 94.99917 * 15 14 13 17 17 N 1.32128 * 120.00157 * 179.97438 * 16 15 14 18 18 C 1.32157 * 119.99679 * 0.02562 * 17 16 15 19 19 C 1.38343 * 119.99923 * 359.97438 * 18 17 16 20 20 N 1.32118 * 120.00442 * 274.72639 * 15 14 13 21 21 H 1.09001 * 109.46644 * 294.85018 * 1 2 3 22 22 H 1.08999 * 109.47164 * 174.85166 * 1 2 3 23 23 H 1.08994 * 109.47131 * 54.84587 * 1 2 3 24 24 H 1.08999 * 109.47228 * 120.00301 * 2 1 3 25 25 H 1.09002 * 109.46913 * 240.00017 * 2 1 3 26 26 H 0.97001 * 120.00263 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99920 * 321.94239 * 13 3 2 28 28 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 29 29 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 30 30 H 1.08001 * 120.00299 * 359.96098 * 16 15 14 31 31 H 1.07996 * 119.99922 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.99628 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4438 -0.0925 5 6 1.4361 2.1888 -1.1615 6 1 0.8269 3.0628 -0.9838 7 6 1.6611 1.7560 -2.4511 8 7 2.4025 0.6915 -2.6675 9 14 0.9130 2.6816 -3.8909 10 1 1.8551 3.7358 -4.3450 11 1 0.6535 1.7360 -5.0061 12 1 -0.3643 3.3087 -3.4663 13 7 1.6548 2.0981 1.2569 14 6 2.6433 1.8366 2.3116 15 6 2.2833 2.6252 3.5443 16 6 1.5411 2.0341 4.5517 17 7 1.2259 2.7254 5.6326 18 6 1.6189 3.9815 5.7515 19 6 2.3608 4.5724 4.7444 20 7 2.6807 3.8794 3.6657 21 1 -0.3633 0.4319 0.9325 22 1 -0.3633 -1.0235 -0.0922 23 1 -0.3633 0.5917 -0.8402 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.5606 0.3868 -3.5747 27 1 0.7322 1.8104 1.5467 28 1 2.6482 0.7729 2.5493 29 1 3.6324 2.1359 1.9648 30 1 1.2194 1.0077 4.4542 31 1 1.3616 4.5465 6.6353 32 1 2.6823 5.5989 4.8418 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054766807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:22 Heat of formation + Delta-G solvation = 22.830583 kcal Electronic energy + Delta-G solvation = -14684.958779 eV Core-core repulsion = 12258.606768 eV Total energy + Delta-G solvation = -2426.352012 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.95325 -38.39823 -35.48415 -34.61483 -33.19937 -31.49624 -28.64079 -26.71118 -25.46508 -25.08150 -23.28920 -21.21407 -18.57956 -18.29660 -17.77208 -16.96023 -16.65884 -16.23360 -15.64780 -15.23129 -14.64176 -14.48376 -14.22409 -13.73877 -13.47821 -13.25099 -12.81085 -12.60509 -12.48600 -12.43172 -12.13787 -11.89702 -11.68027 -11.41694 -11.00655 -10.42224 -10.20732 -9.94445 -8.96683 -8.05093 -6.12929 -0.14130 0.22045 1.42894 1.44614 1.54001 2.45766 2.75899 3.16194 3.23843 3.39917 3.56510 3.79388 4.01476 4.23375 4.44767 4.54861 4.58399 4.61672 4.66659 4.73162 4.84416 5.12368 5.35900 5.43686 5.47554 5.72705 5.76617 5.83261 6.31681 6.38686 6.65089 6.79013 6.91714 6.97938 7.54287 9.00136 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.006550 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.037029 B = 4274.017809 C = 4584.875237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.139 4.139 3 C 0.223 3.777 4 H 0.000 1.000 5 C -0.500 4.500 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.681 5.681 14 C 0.113 3.887 15 C 0.082 3.918 16 C 0.048 3.952 17 N -0.456 5.456 18 C 0.045 3.955 19 C 0.049 3.951 20 N -0.458 5.458 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.259 0.741 27 H 0.333 0.667 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.183 0.817 31 H 0.208 0.792 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 2.930 14.233 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.179 4.179 3 C 0.115 3.885 4 H 0.018 0.982 5 C -0.539 4.539 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.313 5.313 14 C -0.017 4.017 15 C -0.057 4.057 16 C -0.111 4.111 17 N -0.171 5.171 18 C -0.115 4.115 19 C -0.112 4.112 20 N -0.174 5.174 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.200 0.800 31 H 0.225 0.775 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.527 3.406 13.900 14.392 hybrid contribution -0.245 -0.540 -0.952 1.122 sum -1.772 2.866 12.947 13.378 Atomic orbital electron populations 1.21491 0.95988 0.99692 1.00795 1.21963 0.96464 0.99568 0.99878 1.18984 0.93841 0.89648 0.86032 0.98158 1.21250 1.30431 1.11272 0.90953 0.93383 1.25548 0.95969 0.95888 1.00883 1.69998 1.39913 1.24937 1.21071 0.85682 0.78877 0.78423 0.79386 1.20752 1.20903 1.19588 1.60607 1.04267 1.63452 1.02986 1.20670 0.97027 0.95903 0.88117 1.22195 0.95309 0.91765 0.96479 1.23780 0.95437 1.02100 0.89811 1.68504 1.17816 1.08345 1.22425 1.24388 0.94476 0.91671 1.00955 1.24425 0.95239 1.02337 0.89174 1.68276 1.18853 1.06954 1.23351 0.93240 0.93719 0.93844 0.94793 0.91874 0.93150 0.84836 0.92384 0.91559 0.80044 0.77540 0.78318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.40 71.98 0.68 -4.26 16 2 C -0.14 -6.28 5.51 30.60 0.17 -6.11 16 3 C 0.22 11.01 2.33 44.17 0.10 11.12 16 4 H 0.00 0.03 7.70 -2.39 -0.02 0.01 16 5 C -0.50 -27.41 7.25 25.60 0.19 -27.23 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 7 C 0.02 0.85 5.28 84.65 0.45 1.29 16 8 N -0.92 -52.23 11.38 21.45 0.24 -51.98 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 N -0.68 -28.60 6.19 -499.49 -3.09 -31.69 16 14 C 0.11 4.02 5.84 85.56 0.50 4.52 16 15 C 0.08 2.59 6.34 42.55 0.27 2.86 16 16 C 0.05 1.28 10.86 84.68 0.92 2.20 16 17 N -0.46 -11.50 10.50 -195.22 -2.05 -13.55 16 18 C 0.05 0.90 11.22 84.67 0.95 1.85 16 19 C 0.05 1.10 11.22 84.67 0.95 2.05 16 20 N -0.46 -14.62 10.42 -183.30 -1.91 -16.53 16 21 H 0.05 1.75 6.63 -2.39 -0.02 1.73 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.97 6.85 -2.39 -0.02 1.96 16 24 H 0.03 1.35 7.50 -2.39 -0.02 1.33 16 25 H 0.06 3.27 6.22 -2.39 -0.01 3.26 16 26 H 0.26 14.14 8.31 -92.71 -0.77 13.36 16 27 H 0.33 13.03 6.69 -89.69 -0.60 12.43 16 28 H 0.06 1.82 7.45 -2.39 -0.02 1.81 16 29 H 0.07 2.59 7.93 -2.38 -0.02 2.57 16 30 H 0.18 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.21 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -64.55 270.04 0.91 -63.65 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.52 Total: 15.68 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.17 Total: -11.71 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -6.81 Total: -113.75 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -64.55 0.91 -63.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054766807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.478 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds