Wall clock time and date at job start Sun Mar 29 2020 22:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.09003 * 109.47288 * 54.72811 * 3 2 1 5 5 C 1.50706 * 109.47120 * 174.72547 * 3 2 1 6 6 H 1.08007 * 119.99754 * 120.14421 * 5 3 2 7 7 C 1.37873 * 120.00231 * 300.14481 * 5 3 2 8 8 N 1.31509 * 119.99960 * 166.70889 * 7 5 3 9 9 Si 1.86801 * 119.99840 * 346.70772 * 7 5 3 10 10 H 1.48505 * 109.47246 * 264.65140 * 9 7 5 11 11 H 1.48499 * 109.47186 * 24.65235 * 9 7 5 12 12 H 1.48506 * 109.47121 * 144.65146 * 9 7 5 13 13 N 1.46897 * 109.47416 * 294.72848 * 3 2 1 14 14 C 1.46893 * 111.00174 * 101.48921 * 13 3 2 15 15 C 1.50707 * 109.47320 * 183.01044 * 14 13 3 16 16 C 1.38597 * 120.80211 * 269.72534 * 15 14 13 17 17 N 1.32330 * 119.10380 * 179.71835 * 16 15 14 18 18 C 1.31793 * 120.81965 * 0.56116 * 17 16 15 19 19 N 1.31791 * 121.75413 * 359.71283 * 18 17 16 20 20 C 1.32338 * 120.81799 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.47391 * 186.79382 * 1 2 3 22 22 H 1.09001 * 109.47250 * 306.78978 * 1 2 3 23 23 H 1.09004 * 109.46992 * 66.79079 * 1 2 3 24 24 H 1.09008 * 109.47057 * 240.00125 * 2 1 3 25 25 H 1.09001 * 109.47526 * 120.00236 * 2 1 3 26 26 H 0.97005 * 120.00257 * 180.02562 * 8 7 5 27 27 H 1.00902 * 110.99701 * 337.53596 * 13 3 2 28 28 H 1.09000 * 109.47275 * 303.01207 * 14 13 3 29 29 H 1.09001 * 109.47056 * 63.01381 * 14 13 3 30 30 H 1.08005 * 120.44283 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.12139 * 179.72733 * 18 17 16 32 32 H 1.08002 * 120.44632 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8390 5 6 3.5413 1.4444 0.1306 6 1 4.1500 1.8899 -0.6424 7 6 4.1379 0.8777 1.2369 8 7 5.4316 0.6418 1.2379 9 14 3.1083 0.4448 2.7343 10 1 3.1734 1.5557 3.7177 11 1 1.6981 0.2319 2.3206 12 1 3.6351 -0.7972 3.3550 13 7 1.6570 2.0973 -1.2579 14 6 0.4907 2.9690 -1.0639 15 6 0.0827 3.5643 -2.3869 16 6 0.6100 4.7727 -2.8142 17 7 0.2326 5.2619 -3.9844 18 6 -0.6409 4.6204 -4.7343 19 7 -1.1673 3.4722 -4.3581 20 6 -0.8328 2.9191 -3.2033 21 1 -0.3634 -1.0204 0.1216 22 1 -0.3634 0.6154 0.8230 23 1 -0.3633 0.4050 -0.9445 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.8513 0.2427 2.0161 27 1 1.4829 1.4162 -1.9817 28 1 -0.3355 2.3854 -0.6578 29 1 0.7465 3.7689 -0.3690 30 1 1.3226 5.3058 -2.2022 31 1 -0.9330 5.0469 -5.6826 32 1 -1.2675 1.9778 -2.9010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054768262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:27 Heat of formation + Delta-G solvation = 51.117208 kcal Electronic energy + Delta-G solvation = -14742.384082 eV Core-core repulsion = 12317.258670 eV Total energy + Delta-G solvation = -2425.125412 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91162 -37.08949 -33.66544 -33.61901 -32.00981 -30.44313 -27.70187 -25.26721 -24.49453 -22.72873 -21.80370 -20.10024 -17.59829 -17.47622 -16.81896 -15.31147 -15.10664 -14.66259 -13.99659 -13.80737 -13.61564 -13.44627 -13.15885 -12.69345 -12.14213 -11.83916 -11.72108 -11.21007 -10.89064 -10.75370 -10.72805 -10.41927 -9.99606 -9.49935 -9.39312 -9.20015 -9.16236 -8.45446 -7.48599 -6.08983 -4.02739 0.95425 1.13406 3.23311 3.31781 3.35825 3.82718 4.17547 4.27934 4.38862 4.70278 4.82571 4.96266 5.17049 5.23087 5.47624 5.66785 5.71284 5.76230 5.90249 5.93941 6.10511 6.38151 6.45656 6.48711 6.65309 6.74924 6.99260 7.09736 7.68183 7.82539 8.10439 8.17069 8.65871 9.07507 9.56050 11.04453 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044170 B = 0.006939 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.758881 B = 4034.366076 C = 4382.327766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C 0.194 3.806 4 H 0.025 0.975 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.247 1.247 12 H -0.288 1.288 13 N -0.665 5.665 14 C 0.098 3.902 15 C -0.171 4.171 16 C 0.165 3.835 17 N -0.522 5.522 18 C 0.279 3.721 19 N -0.523 5.523 20 C 0.145 3.855 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.263 0.737 27 H 0.329 0.671 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.171 0.829 31 H 0.192 0.808 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 3.660 -5.318 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.196 4.196 3 C 0.086 3.914 4 H 0.043 0.957 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.533 5.533 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.172 1.172 12 H -0.214 1.214 13 N -0.295 5.295 14 C -0.032 4.032 15 C -0.176 4.176 16 C -0.001 4.001 17 N -0.235 5.235 18 C -0.010 4.010 19 N -0.237 5.237 20 C -0.021 4.021 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.188 0.812 31 H 0.208 0.792 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.649 4.492 -6.011 14.707 hybrid contribution -0.815 -1.387 1.808 2.420 sum -13.464 3.105 -4.203 14.443 Atomic orbital electron populations 1.21950 0.98457 1.00459 1.00293 1.22756 0.92875 1.01603 1.02380 1.19588 0.96879 0.88172 0.86801 0.95739 1.20983 0.88963 1.37311 1.06718 0.90144 1.24921 0.94734 0.95022 0.98424 1.69952 1.10349 1.43254 1.29743 0.87437 0.82256 0.78061 0.83888 1.20947 1.17155 1.21392 1.60743 1.33004 1.25507 1.10285 1.20962 0.93429 0.97635 0.91183 1.21838 0.98341 0.97473 0.99921 1.23229 0.93834 0.91882 0.91125 1.68435 1.13489 1.35536 1.06079 1.24875 0.89361 0.87927 0.98793 1.68384 1.26551 1.12154 1.16585 1.23122 0.92051 0.98309 0.88626 0.93808 0.93465 0.93788 0.92272 0.91546 0.92751 0.85413 0.94269 0.89951 0.81223 0.79186 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.63 37.15 0.32 -2.11 16 2 C -0.16 -3.12 4.37 -26.74 -0.12 -3.23 16 3 C 0.19 4.21 1.75 -68.87 -0.12 4.09 16 4 H 0.02 0.54 6.67 -51.93 -0.35 0.20 16 5 C -0.50 -13.59 9.35 -34.44 -0.32 -13.91 16 6 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 7 C 0.07 1.97 5.35 -17.82 -0.10 1.88 16 8 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 9 Si 0.86 20.21 25.68 -169.99 -4.37 15.85 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.25 -5.33 5.15 56.52 0.29 -5.04 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.67 -12.35 6.08 -109.22 -0.66 -13.01 16 14 C 0.10 1.46 5.26 -4.98 -0.03 1.43 16 15 C -0.17 -2.33 5.40 -104.35 -0.56 -2.90 16 16 C 0.17 2.28 11.01 -17.20 -0.19 2.09 16 17 N -0.52 -7.28 10.44 -14.58 -0.15 -7.43 16 18 C 0.28 3.51 12.29 -92.16 -1.13 2.38 16 19 N -0.52 -7.02 10.44 -14.58 -0.15 -7.18 16 20 C 0.15 1.87 11.01 -17.20 -0.19 1.68 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 23 H 0.04 0.60 6.72 -51.93 -0.35 0.25 16 24 H 0.06 1.17 8.03 -51.92 -0.42 0.76 16 25 H 0.07 1.43 4.10 -51.93 -0.21 1.21 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.33 5.81 7.94 -39.29 -0.31 5.50 16 28 H 0.04 0.54 5.99 -51.93 -0.31 0.23 16 29 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.17 2.12 8.06 -52.48 -0.42 1.70 16 31 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 264.68 15.07 3.99 3.99 Total: -1.00 -30.30 264.68 -7.15 -37.46 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.15 Total: 5.04 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.43 Total: -8.61 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.20 Total: -53.72 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.37 Total: 15.85 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.30 -7.15 -37.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054768262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.574 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds