Wall clock time and date at job start Sun Mar 29 2020 22:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.09003 * 109.47288 * 54.72811 * 3 2 1 5 5 C 1.50706 * 109.47120 * 174.72547 * 3 2 1 6 6 H 1.08007 * 119.99754 * 120.14421 * 5 3 2 7 7 C 1.37873 * 120.00231 * 300.14481 * 5 3 2 8 8 N 1.31509 * 119.99960 * 166.70889 * 7 5 3 9 9 Si 1.86801 * 119.99840 * 346.70772 * 7 5 3 10 10 H 1.48505 * 109.47246 * 264.65140 * 9 7 5 11 11 H 1.48499 * 109.47186 * 24.65235 * 9 7 5 12 12 H 1.48506 * 109.47121 * 144.65146 * 9 7 5 13 13 N 1.46897 * 109.47416 * 294.72848 * 3 2 1 14 14 C 1.46893 * 111.00174 * 101.48921 * 13 3 2 15 15 C 1.50707 * 109.47320 * 183.01044 * 14 13 3 16 16 C 1.38597 * 120.80211 * 269.72534 * 15 14 13 17 17 N 1.32330 * 119.10380 * 179.71835 * 16 15 14 18 18 C 1.31793 * 120.81965 * 0.56116 * 17 16 15 19 19 N 1.31791 * 121.75413 * 359.71283 * 18 17 16 20 20 C 1.32338 * 120.81799 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.47391 * 186.79382 * 1 2 3 22 22 H 1.09001 * 109.47250 * 306.78978 * 1 2 3 23 23 H 1.09004 * 109.46992 * 66.79079 * 1 2 3 24 24 H 1.09008 * 109.47057 * 240.00125 * 2 1 3 25 25 H 1.09001 * 109.47526 * 120.00236 * 2 1 3 26 26 H 0.97005 * 120.00257 * 180.02562 * 8 7 5 27 27 H 1.00902 * 110.99701 * 337.53596 * 13 3 2 28 28 H 1.09000 * 109.47275 * 303.01207 * 14 13 3 29 29 H 1.09001 * 109.47056 * 63.01381 * 14 13 3 30 30 H 1.08005 * 120.44283 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.12139 * 179.72733 * 18 17 16 32 32 H 1.08002 * 120.44632 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8390 5 6 3.5413 1.4444 0.1306 6 1 4.1500 1.8899 -0.6424 7 6 4.1379 0.8777 1.2369 8 7 5.4316 0.6418 1.2379 9 14 3.1083 0.4448 2.7343 10 1 3.1734 1.5557 3.7177 11 1 1.6981 0.2319 2.3206 12 1 3.6351 -0.7972 3.3550 13 7 1.6570 2.0973 -1.2579 14 6 0.4907 2.9690 -1.0639 15 6 0.0827 3.5643 -2.3869 16 6 0.6100 4.7727 -2.8142 17 7 0.2326 5.2619 -3.9844 18 6 -0.6409 4.6204 -4.7343 19 7 -1.1673 3.4722 -4.3581 20 6 -0.8328 2.9191 -3.2033 21 1 -0.3634 -1.0204 0.1216 22 1 -0.3634 0.6154 0.8230 23 1 -0.3633 0.4050 -0.9445 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.8513 0.2427 2.0161 27 1 1.4829 1.4162 -1.9817 28 1 -0.3355 2.3854 -0.6578 29 1 0.7465 3.7689 -0.3690 30 1 1.3226 5.3058 -2.2022 31 1 -0.9330 5.0469 -5.6826 32 1 -1.2675 1.9778 -2.9010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054768262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:27 Heat of formation + Delta-G solvation = 29.512827 kcal Electronic energy + Delta-G solvation = -14743.320918 eV Core-core repulsion = 12317.258670 eV Total energy + Delta-G solvation = -2426.062248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.92569 -38.59359 -35.10760 -34.63258 -33.87303 -31.72334 -29.34306 -26.62591 -25.51497 -24.27287 -23.01556 -21.77332 -18.83760 -18.54495 -18.47736 -16.95834 -16.53370 -15.92861 -15.48077 -15.12387 -14.84209 -14.55227 -14.45491 -14.27651 -13.54326 -13.36454 -13.18568 -12.67331 -12.55875 -12.37669 -11.80057 -11.77576 -11.60978 -11.27924 -11.05386 -10.56354 -10.40695 -10.19252 -8.95361 -8.23619 -6.21975 -0.05732 0.11568 1.36656 1.41527 1.49089 2.39275 2.80247 3.10203 3.28245 3.30144 3.60246 3.72409 3.88515 3.98031 4.32784 4.41487 4.49362 4.55697 4.64793 4.77737 4.87439 5.03575 5.13335 5.21814 5.25156 5.46289 5.55002 5.76182 5.97213 6.06949 6.69861 6.77522 6.85233 7.10780 7.41920 8.94049 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044170 B = 0.006939 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.758881 B = 4034.366076 C = 4382.327766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.201 3.799 4 H 0.030 0.970 5 C -0.506 4.506 6 H 0.028 0.972 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.925 3.075 10 H -0.284 1.284 11 H -0.208 1.208 12 H -0.292 1.292 13 N -0.681 5.681 14 C 0.106 3.894 15 C -0.178 4.178 16 C 0.155 3.845 17 N -0.540 5.540 18 C 0.278 3.722 19 N -0.535 5.535 20 C 0.150 3.850 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.262 0.738 27 H 0.334 0.666 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.174 0.826 31 H 0.222 0.778 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.171 3.302 -5.207 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.091 3.909 4 H 0.048 0.952 5 C -0.545 4.545 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.749 3.251 10 H -0.210 1.210 11 H -0.130 1.130 12 H -0.219 1.219 13 N -0.312 5.312 14 C -0.024 4.024 15 C -0.183 4.183 16 C -0.011 4.011 17 N -0.253 5.253 18 C -0.009 4.009 19 N -0.248 5.248 20 C -0.016 4.016 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.191 0.809 31 H 0.238 0.762 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.855 4.150 -5.926 17.428 hybrid contribution 0.228 -1.198 1.615 2.024 sum -15.627 2.952 -4.310 16.477 Atomic orbital electron populations 1.21878 0.94595 1.02118 1.01862 1.22603 0.96261 0.99347 1.01281 1.19342 0.93112 0.90035 0.88382 0.95235 1.21342 0.92040 1.35922 1.05150 0.95390 1.25835 0.95839 0.95205 1.01891 1.70127 1.12827 1.45442 1.30829 0.86339 0.82487 0.77253 0.79015 1.21042 1.13046 1.21851 1.60490 1.35837 1.25774 1.09097 1.20897 0.92544 0.96966 0.91987 1.21681 0.99239 0.97618 0.99726 1.23407 0.93949 0.92318 0.91385 1.68489 1.14326 1.36158 1.06355 1.25533 0.88352 0.87592 0.99469 1.68487 1.26954 1.12531 1.16866 1.23518 0.91238 0.98801 0.88085 0.91962 0.92747 0.91620 0.93018 0.93203 0.92887 0.84806 0.92073 0.90338 0.80937 0.76208 0.79613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.63 71.98 0.62 -3.32 16 2 C -0.16 -5.78 4.37 30.59 0.13 -5.65 16 3 C 0.20 8.43 1.75 44.17 0.08 8.51 16 4 H 0.03 1.23 6.67 -2.39 -0.02 1.22 16 5 C -0.51 -28.13 9.35 25.60 0.24 -27.89 16 6 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 7 C 0.01 0.50 5.35 84.65 0.45 0.96 16 8 N -0.95 -59.40 13.96 21.44 0.30 -59.10 16 9 Si 0.92 41.63 25.68 68.60 1.76 43.40 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.21 -8.01 5.15 99.48 0.51 -7.50 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 13 N -0.68 -24.40 6.08 -499.47 -3.04 -27.44 16 14 C 0.11 2.88 5.26 85.56 0.45 3.33 16 15 C -0.18 -4.47 5.40 -19.69 -0.11 -4.57 16 16 C 0.16 4.10 11.01 84.70 0.93 5.03 16 17 N -0.54 -14.27 10.44 -200.05 -2.09 -16.35 16 18 C 0.28 6.39 12.29 180.89 2.22 8.61 16 19 N -0.53 -12.92 10.44 -200.05 -2.09 -15.01 16 20 C 0.15 3.40 11.01 84.70 0.93 4.33 16 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.05 1.40 8.08 -2.39 -0.02 1.38 16 23 H 0.06 1.47 6.72 -2.39 -0.02 1.46 16 24 H 0.05 1.97 8.03 -2.38 -0.02 1.95 16 25 H 0.05 2.00 4.10 -2.39 -0.01 1.99 16 26 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 27 H 0.33 11.24 7.94 -89.69 -0.71 10.53 16 28 H 0.06 1.42 5.99 -2.39 -0.01 1.41 16 29 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 30 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 31 H 0.22 3.41 8.06 -2.91 -0.02 3.38 16 32 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -67.60 264.68 1.02 -66.58 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.22 Total: 18.60 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.96 Total: -10.67 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -6.92 Total: -117.91 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.76 Total: 43.40 kcal Total: -67.60 1.02 -66.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054768262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.094 kcal (2) G-P(sol) polarization free energy of solvation -67.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds