Wall clock time and date at job start Sun Mar 29 2020 22:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 H 1.09002 * 109.46986 * 177.96658 * 3 2 1 5 5 C 1.50699 * 109.46898 * 57.96642 * 3 2 1 6 6 H 1.08004 * 119.99815 * 239.99735 * 5 3 2 7 7 C 1.37874 * 120.00121 * 60.00366 * 5 3 2 8 8 N 1.31512 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00005 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46890 * 89.99863 * 9 7 5 11 11 H 1.48494 * 109.46885 * 209.99547 * 9 7 5 12 12 H 1.48495 * 109.47126 * 330.00115 * 9 7 5 13 13 N 1.46893 * 109.46972 * 297.96659 * 3 2 1 14 14 C 1.46899 * 111.00120 * 273.74625 * 13 3 2 15 15 C 1.50702 * 109.47462 * 174.87598 * 14 13 3 16 16 C 1.38602 * 120.79917 * 269.98263 * 15 14 13 17 17 N 1.32335 * 119.10393 * 180.02562 * 16 15 14 18 18 C 1.31799 * 120.81705 * 359.97438 * 17 16 15 19 19 N 1.31791 * 121.75373 * 359.97438 * 18 17 16 20 20 C 1.32337 * 120.82285 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.47052 * 294.45358 * 1 2 3 22 22 H 1.09008 * 109.46925 * 54.45090 * 1 2 3 23 23 H 1.08996 * 109.47548 * 174.44762 * 1 2 3 24 24 H 1.08993 * 109.46970 * 239.99979 * 2 1 3 25 25 H 1.09006 * 109.46937 * 119.99824 * 2 1 3 26 26 H 0.96999 * 120.00565 * 180.02562 * 8 7 5 27 27 H 1.00900 * 110.99892 * 149.79266 * 13 3 2 28 28 H 1.09005 * 109.46656 * 54.87874 * 14 13 3 29 29 H 1.09003 * 109.47269 * 294.87737 * 14 13 3 30 30 H 1.07997 * 120.44872 * 0.04080 * 16 15 14 31 31 H 1.07998 * 119.12404 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.45145 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4969 2.1673 1.2045 6 1 0.8798 3.0441 1.0743 7 6 1.7879 1.7112 2.4727 8 7 2.5389 0.6434 2.6312 9 14 1.1152 2.6101 3.9657 10 1 -0.2060 2.0401 4.3329 11 1 2.0559 2.4522 5.1038 12 1 0.9609 4.0522 3.6473 13 7 1.5909 2.1206 -1.2232 14 6 2.5281 1.8858 -2.3297 15 6 1.9732 2.4886 -3.5946 16 6 1.1623 1.7459 -4.4384 17 7 0.6938 2.3085 -5.5407 18 6 0.9891 3.5578 -5.8391 19 7 1.7560 4.2943 -5.0604 20 6 2.2598 3.7995 -3.9411 21 1 -0.3633 0.4254 0.9355 22 1 -0.3633 0.5975 -0.8362 23 1 -0.3634 -1.0228 -0.0994 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.7433 0.3222 3.5234 27 1 1.4615 3.1083 -1.0624 28 1 2.6653 0.8133 -2.4681 29 1 3.4876 2.3480 -2.0975 30 1 0.9160 0.7219 -4.1993 31 1 0.5922 3.9895 -6.7460 32 1 2.8872 4.4085 -3.3072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054768263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:30 Heat of formation + Delta-G solvation = 39.702095 kcal Electronic energy + Delta-G solvation = -14687.812233 eV Core-core repulsion = 12262.191825 eV Total energy + Delta-G solvation = -2425.620408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.82957 -36.56141 -33.70283 -33.55028 -31.62780 -30.14695 -26.86378 -24.94200 -24.42914 -23.20591 -21.97090 -19.09347 -17.52686 -17.41511 -16.55944 -15.05725 -14.69126 -14.37633 -14.06731 -13.57982 -13.46899 -13.38355 -12.97681 -12.23870 -11.98674 -11.58437 -11.05268 -10.91747 -10.68716 -10.62719 -10.44600 -10.19310 -9.81102 -9.47574 -9.25558 -9.11112 -8.84228 -8.53488 -7.40007 -6.08325 -4.14105 1.03652 1.19814 3.25923 3.33080 3.35517 3.89703 4.24109 4.34140 4.35600 4.78510 4.96740 5.04936 5.23016 5.46066 5.57146 5.82070 6.05989 6.20070 6.45836 6.52132 6.64653 6.78888 7.05596 7.16104 7.19355 7.41929 7.66399 7.71563 7.76252 8.15210 8.16678 8.26754 8.53786 8.93490 9.51110 10.97627 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043871 B = 0.006457 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.077890 B = 4335.427230 C = 4606.486108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.003 0.997 5 C -0.515 4.515 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.102 3.898 15 C -0.164 4.164 16 C 0.162 3.838 17 N -0.524 5.524 18 C 0.276 3.724 19 N -0.523 5.523 20 C 0.145 3.855 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.013 0.987 24 H 0.010 0.990 25 H 0.086 0.914 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.167 0.833 31 H 0.190 0.810 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 2.337 -10.448 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.021 0.979 5 C -0.554 4.554 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.312 5.312 14 C -0.029 4.029 15 C -0.169 4.169 16 C -0.005 4.005 17 N -0.237 5.237 18 C -0.012 4.012 19 N -0.237 5.237 20 C -0.021 4.021 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.032 0.968 24 H 0.029 0.971 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.185 0.815 31 H 0.207 0.793 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.999 2.103 -11.309 11.546 hybrid contribution 0.702 0.616 1.937 2.150 sum -0.298 2.718 -9.372 9.763 Atomic orbital electron populations 1.21443 0.97453 0.97206 1.01600 1.21440 0.95141 0.98084 0.99410 1.19161 0.93457 0.91668 0.84814 0.97933 1.21154 1.31846 1.12083 0.90284 0.92299 1.24868 0.94981 0.95001 0.98864 1.69875 1.37224 1.23044 1.22511 0.86570 0.78826 0.80084 0.82381 1.20598 1.21278 1.19974 1.60752 1.46776 1.16462 1.07170 1.20769 0.93773 1.00271 0.88051 1.21871 0.99533 0.96359 0.99129 1.23156 0.89208 1.00323 0.87769 1.68414 1.23144 1.13219 1.18910 1.24837 0.91477 0.86814 0.98121 1.68379 1.10830 1.38900 1.05566 1.23156 0.94297 0.92515 0.92086 0.92931 0.93520 0.96766 0.97101 0.89549 0.92877 0.85069 0.90235 0.94646 0.81540 0.79297 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.46 37.16 0.35 -2.25 16 2 C -0.10 -2.35 5.58 -26.73 -0.15 -2.50 16 3 C 0.22 5.04 2.30 -68.87 -0.16 4.88 16 4 H 0.00 0.08 7.84 -51.93 -0.41 -0.33 16 5 C -0.52 -13.26 7.33 -34.44 -0.25 -13.51 16 6 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 7 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.31 11.34 55.43 0.63 -23.69 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.68 -13.15 5.50 -109.22 -0.60 -13.75 16 14 C 0.10 1.63 5.63 -4.98 -0.03 1.60 16 15 C -0.16 -2.36 5.47 -104.35 -0.57 -2.93 16 16 C 0.16 2.29 11.01 -17.20 -0.19 2.10 16 17 N -0.52 -7.47 10.44 -14.58 -0.15 -7.63 16 18 C 0.28 3.61 12.29 -92.15 -1.13 2.47 16 19 N -0.52 -7.37 10.44 -14.58 -0.15 -7.52 16 20 C 0.15 2.00 11.01 -17.20 -0.19 1.81 16 21 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 22 H 0.05 0.98 7.50 -51.92 -0.39 0.59 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.01 0.22 7.43 -51.93 -0.39 -0.17 16 25 H 0.09 2.23 6.13 -51.93 -0.32 1.91 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.33 6.41 8.24 -39.29 -0.32 6.09 16 28 H 0.08 1.27 7.36 -51.93 -0.38 0.89 16 29 H 0.04 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 272.14 15.07 4.10 4.10 Total: -1.00 -27.86 272.14 -7.84 -35.71 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.23 Total: 3.85 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.41 Total: -6.70 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.28 Total: -52.58 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.86 -7.84 -35.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054768263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.408 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds