Wall clock time and date at job start Sun Mar 29 2020 22:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 H 1.09002 * 109.46986 * 177.96658 * 3 2 1 5 5 C 1.50699 * 109.46898 * 57.96642 * 3 2 1 6 6 H 1.08004 * 119.99815 * 239.99735 * 5 3 2 7 7 C 1.37874 * 120.00121 * 60.00366 * 5 3 2 8 8 N 1.31512 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00005 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46890 * 89.99863 * 9 7 5 11 11 H 1.48494 * 109.46885 * 209.99547 * 9 7 5 12 12 H 1.48495 * 109.47126 * 330.00115 * 9 7 5 13 13 N 1.46893 * 109.46972 * 297.96659 * 3 2 1 14 14 C 1.46899 * 111.00120 * 273.74625 * 13 3 2 15 15 C 1.50702 * 109.47462 * 174.87598 * 14 13 3 16 16 C 1.38602 * 120.79917 * 269.98263 * 15 14 13 17 17 N 1.32335 * 119.10393 * 180.02562 * 16 15 14 18 18 C 1.31799 * 120.81705 * 359.97438 * 17 16 15 19 19 N 1.31791 * 121.75373 * 359.97438 * 18 17 16 20 20 C 1.32337 * 120.82285 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.47052 * 294.45358 * 1 2 3 22 22 H 1.09008 * 109.46925 * 54.45090 * 1 2 3 23 23 H 1.08996 * 109.47548 * 174.44762 * 1 2 3 24 24 H 1.08993 * 109.46970 * 239.99979 * 2 1 3 25 25 H 1.09006 * 109.46937 * 119.99824 * 2 1 3 26 26 H 0.96999 * 120.00565 * 180.02562 * 8 7 5 27 27 H 1.00900 * 110.99892 * 149.79266 * 13 3 2 28 28 H 1.09005 * 109.46656 * 54.87874 * 14 13 3 29 29 H 1.09003 * 109.47269 * 294.87737 * 14 13 3 30 30 H 1.07997 * 120.44872 * 0.04080 * 16 15 14 31 31 H 1.07998 * 119.12404 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.45145 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4969 2.1673 1.2045 6 1 0.8798 3.0441 1.0743 7 6 1.7879 1.7112 2.4727 8 7 2.5389 0.6434 2.6312 9 14 1.1152 2.6101 3.9657 10 1 -0.2060 2.0401 4.3329 11 1 2.0559 2.4522 5.1038 12 1 0.9609 4.0522 3.6473 13 7 1.5909 2.1206 -1.2232 14 6 2.5281 1.8858 -2.3297 15 6 1.9732 2.4886 -3.5946 16 6 1.1623 1.7459 -4.4384 17 7 0.6938 2.3085 -5.5407 18 6 0.9891 3.5578 -5.8391 19 7 1.7560 4.2943 -5.0604 20 6 2.2598 3.7995 -3.9411 21 1 -0.3633 0.4254 0.9355 22 1 -0.3633 0.5975 -0.8362 23 1 -0.3634 -1.0228 -0.0994 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.7433 0.3222 3.5234 27 1 1.4615 3.1083 -1.0624 28 1 2.6653 0.8133 -2.4681 29 1 3.4876 2.3480 -2.0975 30 1 0.9160 0.7219 -4.1993 31 1 0.5922 3.9895 -6.7460 32 1 2.8872 4.4085 -3.3072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054768263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:30 Heat of formation + Delta-G solvation = 22.709065 kcal Electronic energy + Delta-G solvation = -14688.549106 eV Core-core repulsion = 12262.191825 eV Total energy + Delta-G solvation = -2426.357281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.89985 -38.21041 -35.25367 -34.61772 -33.36759 -31.70473 -28.54164 -26.45496 -25.50762 -24.99890 -23.22032 -20.90737 -18.64796 -18.48772 -18.31757 -16.90599 -16.01230 -15.82494 -15.65358 -15.01463 -14.68470 -14.51912 -14.44966 -13.98220 -13.68305 -13.12676 -12.85093 -12.69977 -12.40713 -12.08852 -11.85232 -11.75912 -11.50274 -11.27336 -10.80532 -10.54238 -10.37658 -10.18047 -9.01841 -8.08780 -6.20065 -0.03422 0.12345 1.42321 1.44859 1.52713 2.43325 2.82631 3.20933 3.29348 3.30927 3.67046 3.74597 3.89537 4.07417 4.55119 4.63613 4.68147 4.80115 4.83606 4.97806 5.06079 5.32905 5.40795 5.47896 5.58450 5.72974 5.83496 5.91728 5.99554 6.30270 6.46922 6.77884 7.02218 7.11764 7.48670 8.96060 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043871 B = 0.006457 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.077890 B = 4335.427230 C = 4606.486108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C 0.223 3.777 4 H -0.027 1.027 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.677 5.677 14 C 0.109 3.891 15 C -0.172 4.172 16 C 0.159 3.841 17 N -0.537 5.537 18 C 0.277 3.723 19 N -0.536 5.536 20 C 0.146 3.854 21 H 0.027 0.973 22 H 0.053 0.947 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.056 0.944 26 H 0.260 0.740 27 H 0.332 0.668 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.178 0.822 31 H 0.223 0.777 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 2.959 -11.415 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.114 3.886 4 H -0.009 1.009 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.307 5.307 14 C -0.021 4.021 15 C -0.176 4.176 16 C -0.007 4.007 17 N -0.250 5.250 18 C -0.010 4.010 19 N -0.250 5.250 20 C -0.020 4.020 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.195 0.805 31 H 0.239 0.761 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.646 2.734 -12.296 12.703 hybrid contribution 0.912 0.441 2.144 2.371 sum -0.734 3.175 -10.152 10.662 Atomic orbital electron populations 1.21307 0.96291 0.98420 1.00498 1.21323 0.96052 0.97650 0.98734 1.18925 0.91489 0.92194 0.85949 1.00934 1.21442 1.31396 1.12000 0.91378 0.92619 1.25546 0.95356 0.95681 1.01342 1.69999 1.38341 1.24219 1.22835 0.85689 0.78060 0.79227 0.79445 1.20503 1.21222 1.19396 1.60640 1.47626 1.16159 1.06318 1.20684 0.93316 1.00537 0.87556 1.21629 1.00583 0.96790 0.98632 1.23381 0.88745 1.00866 0.87706 1.68498 1.23662 1.13857 1.19002 1.25537 0.90408 0.86411 0.98686 1.68475 1.11454 1.39174 1.05847 1.23441 0.93939 0.92411 0.92165 0.95359 0.92761 0.94744 0.95381 0.92564 0.93046 0.85068 0.90209 0.94271 0.80523 0.76116 0.80362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.46 71.98 0.68 -3.88 16 2 C -0.10 -4.52 5.58 30.60 0.17 -4.35 16 3 C 0.22 10.40 2.30 44.17 0.10 10.50 16 4 H -0.03 -1.40 7.84 -2.39 -0.02 -1.42 16 5 C -0.52 -26.97 7.33 25.60 0.19 -26.78 16 6 H 0.06 2.85 7.60 -2.91 -0.02 2.82 16 7 C 0.02 1.07 5.30 84.65 0.45 1.52 16 8 N -0.91 -50.70 11.34 21.45 0.24 -50.46 16 9 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.68 -25.57 5.50 -499.46 -2.74 -28.31 16 14 C 0.11 3.36 5.63 85.56 0.48 3.84 16 15 C -0.17 -4.64 5.47 -19.69 -0.11 -4.75 16 16 C 0.16 4.20 11.01 84.70 0.93 5.13 16 17 N -0.54 -14.16 10.44 -200.04 -2.09 -16.25 16 18 C 0.28 6.56 12.29 180.88 2.22 8.78 16 19 N -0.54 -13.92 10.44 -200.05 -2.09 -16.01 16 20 C 0.15 3.74 11.01 84.70 0.93 4.68 16 21 H 0.03 1.30 7.37 -2.39 -0.02 1.28 16 22 H 0.05 2.19 7.50 -2.38 -0.02 2.17 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.03 1.15 7.43 -2.39 -0.02 1.13 16 25 H 0.06 2.93 6.13 -2.38 -0.01 2.92 16 26 H 0.26 13.87 8.31 -92.71 -0.77 13.09 16 27 H 0.33 12.53 8.24 -89.69 -0.74 11.80 16 28 H 0.08 2.45 7.36 -2.38 -0.02 2.43 16 29 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.22 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -58.16 272.14 1.78 -56.38 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.38 Total: 15.62 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.05 Total: -5.31 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -6.68 Total: -111.03 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -58.16 1.78 -56.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054768263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.091 kcal (2) G-P(sol) polarization free energy of solvation -58.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds