Wall clock time and date at job start Sun Mar 29 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46906 * 2 1 4 4 H 1.08998 * 109.46921 * 184.28015 * 3 2 1 5 5 C 1.50697 * 109.46974 * 304.28192 * 3 2 1 6 6 H 1.08007 * 119.99701 * 120.00031 * 5 3 2 7 7 C 1.37873 * 120.00231 * 299.99661 * 5 3 2 8 8 N 1.31515 * 119.99952 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47180 * 60.00435 * 9 7 5 11 11 H 1.48502 * 109.46997 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47264 * 300.00046 * 9 7 5 13 13 N 1.46897 * 109.46971 * 64.28384 * 3 2 1 14 14 C 1.46905 * 111.00156 * 86.13784 * 13 3 2 15 15 C 1.50700 * 109.46913 * 183.66804 * 14 13 3 16 16 C 1.38621 * 120.44566 * 95.00469 * 15 14 13 17 17 C 1.38575 * 118.39974 * 179.97438 * 16 15 14 18 18 N 1.32347 * 119.10315 * 0.02562 * 17 16 15 19 19 C 1.31785 * 120.82223 * 359.97438 * 18 17 16 20 20 N 1.31806 * 121.75126 * 359.72134 * 19 18 17 21 21 H 1.09000 * 109.47524 * 54.43569 * 1 2 3 22 22 H 1.09000 * 109.46674 * 174.43834 * 1 2 3 23 23 H 1.09004 * 109.47093 * 294.43678 * 1 2 3 24 24 H 1.08999 * 109.47182 * 240.00372 * 2 1 3 25 25 H 1.08997 * 109.47099 * 119.99607 * 2 1 3 26 26 H 0.96997 * 120.00021 * 179.97438 * 8 7 5 27 27 H 1.00901 * 111.00250 * 322.18380 * 13 3 2 28 28 H 1.08991 * 109.47174 * 303.66981 * 14 13 3 29 29 H 1.08999 * 109.46894 * 63.67399 * 14 13 3 30 30 H 1.08000 * 120.79920 * 0.02562 * 16 15 14 31 31 H 1.08004 * 120.44453 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.12300 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1272 1.4435 -0.0767 5 6 1.4528 2.1829 -1.1740 6 1 0.8411 3.0577 -1.0095 7 6 1.6965 1.7435 -2.4579 8 7 2.4410 0.6780 -2.6581 9 14 0.9693 2.6617 -3.9131 10 1 1.4648 4.0616 -3.9129 11 1 1.3766 1.9921 -5.1745 12 1 -0.5120 2.6608 -3.8088 13 7 1.6365 2.1045 1.2478 14 6 2.6126 1.8532 2.3165 15 6 2.1215 2.4703 3.6006 16 6 1.4179 1.7097 4.5214 17 6 0.9867 2.3201 5.6884 18 7 1.2587 3.6006 5.8835 19 6 1.9305 4.2926 4.9855 20 7 2.3613 3.7441 3.8671 21 1 -0.3634 0.5977 -0.8359 22 1 -0.3633 -1.0229 -0.0996 23 1 -0.3633 0.4251 0.9356 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.6122 0.3687 -3.5613 27 1 0.7113 1.8153 1.5278 28 1 2.7335 0.7786 2.4528 29 1 3.5711 2.2951 2.0444 30 1 1.2114 0.6663 4.3342 31 1 0.4361 1.7585 6.4286 32 1 2.1377 5.3359 5.1731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054789952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:07 Heat of formation + Delta-G solvation = 43.765703 kcal Electronic energy + Delta-G solvation = -14690.066884 eV Core-core repulsion = 12264.622687 eV Total energy + Delta-G solvation = -2425.444197 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83467 -36.74847 -34.10067 -32.68874 -31.73071 -30.29667 -27.06768 -25.16612 -24.24943 -23.28877 -22.10067 -19.37180 -17.40306 -17.05172 -15.88739 -15.37896 -15.00483 -14.66804 -14.36882 -13.70129 -13.58050 -12.95997 -12.74637 -12.41434 -11.95097 -11.66765 -10.92244 -10.80103 -10.77149 -10.57055 -10.49311 -10.03120 -9.90822 -9.64393 -9.49982 -9.12186 -8.98132 -8.35865 -7.31546 -5.99374 -4.00932 1.01203 1.17933 3.34510 3.38600 3.42464 3.88422 4.20568 4.25789 4.44151 4.59292 5.09782 5.16885 5.32429 5.39881 5.54515 5.75338 5.96797 6.13382 6.27714 6.31220 6.49734 6.51991 6.81889 7.12219 7.20112 7.21068 7.46177 7.64089 7.85465 8.20897 8.24106 8.43792 8.54909 9.04122 9.62647 11.07685 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043695 B = 0.006470 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.645252 B = 4326.886427 C = 4609.723609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.672 5.672 14 C 0.102 3.898 15 C 0.195 3.805 16 C -0.227 4.227 17 C 0.143 3.857 18 N -0.533 5.533 19 C 0.290 3.710 20 N -0.500 5.500 21 H 0.070 0.930 22 H 0.025 0.975 23 H 0.026 0.974 24 H 0.096 0.904 25 H 0.011 0.989 26 H 0.260 0.740 27 H 0.326 0.674 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.164 0.836 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -0.236 12.340 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.303 5.303 14 C -0.028 4.028 15 C 0.048 3.952 16 C -0.250 4.250 17 C -0.023 4.023 18 N -0.247 5.247 19 C 0.002 3.998 20 N -0.214 5.214 21 H 0.089 0.911 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.114 0.886 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.144 0.856 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.181 0.819 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.269 1.221 12.167 12.294 hybrid contribution -0.784 -1.434 -0.728 1.789 sum -2.053 -0.213 11.439 11.623 Atomic orbital electron populations 1.21610 0.97671 0.98854 1.00721 1.22129 0.95011 1.01034 1.00460 1.19259 0.96135 0.88524 0.85166 0.94625 1.20999 1.30753 1.11537 0.89482 0.92017 1.24899 0.95486 0.95164 0.98742 1.69860 1.38671 1.23789 1.21314 0.86603 0.79432 0.80009 0.81615 1.20278 1.21482 1.20397 1.60902 1.03298 1.63303 1.02831 1.20934 0.98391 0.96494 0.87003 1.21983 0.89172 0.89092 0.94999 1.22842 1.02130 1.03134 0.96855 1.23128 0.93347 0.90708 0.95105 1.68374 1.14888 1.08282 1.33205 1.24999 0.89414 1.00469 0.84951 1.68337 1.20848 1.12243 1.19977 0.91138 0.95613 0.95539 0.88606 0.97037 0.93008 0.85588 0.94021 0.89375 0.83804 0.81866 0.79037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.40 37.16 0.35 -2.35 16 2 C -0.15 -3.30 5.52 -26.73 -0.15 -3.44 16 3 C 0.22 5.21 2.33 -68.86 -0.16 5.05 16 4 H 0.04 0.95 7.83 -51.93 -0.41 0.54 16 5 C -0.49 -13.11 7.28 -34.44 -0.25 -13.36 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 8 N -0.90 -24.90 11.36 55.43 0.63 -24.27 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -14.02 6.25 -109.22 -0.68 -14.71 16 14 C 0.10 1.80 5.83 -4.97 -0.03 1.77 16 15 C 0.19 3.10 6.30 -82.24 -0.52 2.59 16 16 C -0.23 -2.93 9.84 -39.32 -0.39 -3.32 16 17 C 0.14 1.69 11.30 -17.21 -0.19 1.50 16 18 N -0.53 -7.23 10.44 -14.58 -0.15 -7.38 16 19 C 0.29 4.04 12.29 -92.15 -1.13 2.91 16 20 N -0.50 -8.27 10.38 -10.79 -0.11 -8.39 16 21 H 0.07 1.61 6.88 -51.93 -0.36 1.25 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.03 0.48 6.62 -51.93 -0.34 0.14 16 24 H 0.10 2.44 6.19 -51.93 -0.32 2.11 16 25 H 0.01 0.23 7.40 -51.93 -0.38 -0.16 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.33 6.51 6.54 -39.29 -0.26 6.26 16 28 H 0.04 0.68 7.31 -51.93 -0.38 0.30 16 29 H 0.09 1.64 8.12 -51.93 -0.42 1.22 16 30 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.19 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 270.02 15.07 4.07 4.07 Total: -1.00 -29.18 270.02 -7.94 -37.12 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.11 Total: 4.52 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.56 Total: -7.18 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.32 Total: -54.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.18 -7.94 -37.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054789952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.883 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds