Wall clock time and date at job start Sun Mar 29 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46906 * 2 1 4 4 H 1.08998 * 109.46921 * 184.28015 * 3 2 1 5 5 C 1.50697 * 109.46974 * 304.28192 * 3 2 1 6 6 H 1.08007 * 119.99701 * 120.00031 * 5 3 2 7 7 C 1.37873 * 120.00231 * 299.99661 * 5 3 2 8 8 N 1.31515 * 119.99952 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47180 * 60.00435 * 9 7 5 11 11 H 1.48502 * 109.46997 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47264 * 300.00046 * 9 7 5 13 13 N 1.46897 * 109.46971 * 64.28384 * 3 2 1 14 14 C 1.46905 * 111.00156 * 86.13784 * 13 3 2 15 15 C 1.50700 * 109.46913 * 183.66804 * 14 13 3 16 16 C 1.38621 * 120.44566 * 95.00469 * 15 14 13 17 17 C 1.38575 * 118.39974 * 179.97438 * 16 15 14 18 18 N 1.32347 * 119.10315 * 0.02562 * 17 16 15 19 19 C 1.31785 * 120.82223 * 359.97438 * 18 17 16 20 20 N 1.31806 * 121.75126 * 359.72134 * 19 18 17 21 21 H 1.09000 * 109.47524 * 54.43569 * 1 2 3 22 22 H 1.09000 * 109.46674 * 174.43834 * 1 2 3 23 23 H 1.09004 * 109.47093 * 294.43678 * 1 2 3 24 24 H 1.08999 * 109.47182 * 240.00372 * 2 1 3 25 25 H 1.08997 * 109.47099 * 119.99607 * 2 1 3 26 26 H 0.96997 * 120.00021 * 179.97438 * 8 7 5 27 27 H 1.00901 * 111.00250 * 322.18380 * 13 3 2 28 28 H 1.08991 * 109.47174 * 303.66981 * 14 13 3 29 29 H 1.08999 * 109.46894 * 63.67399 * 14 13 3 30 30 H 1.08000 * 120.79920 * 0.02562 * 16 15 14 31 31 H 1.08004 * 120.44453 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.12300 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1272 1.4435 -0.0767 5 6 1.4528 2.1829 -1.1740 6 1 0.8411 3.0577 -1.0095 7 6 1.6965 1.7435 -2.4579 8 7 2.4410 0.6780 -2.6581 9 14 0.9693 2.6617 -3.9131 10 1 1.4648 4.0616 -3.9129 11 1 1.3766 1.9921 -5.1745 12 1 -0.5120 2.6608 -3.8088 13 7 1.6365 2.1045 1.2478 14 6 2.6126 1.8532 2.3165 15 6 2.1215 2.4703 3.6006 16 6 1.4179 1.7097 4.5214 17 6 0.9867 2.3201 5.6884 18 7 1.2587 3.6006 5.8835 19 6 1.9305 4.2926 4.9855 20 7 2.3613 3.7441 3.8671 21 1 -0.3634 0.5977 -0.8359 22 1 -0.3633 -1.0229 -0.0996 23 1 -0.3633 0.4251 0.9356 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.6122 0.3687 -3.5613 27 1 0.7113 1.8153 1.5278 28 1 2.7335 0.7786 2.4528 29 1 3.5711 2.2951 2.0444 30 1 1.2114 0.6663 4.3342 31 1 0.4361 1.7585 6.4286 32 1 2.1377 5.3359 5.1731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054789952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:06 Heat of formation + Delta-G solvation = 24.718987 kcal Electronic energy + Delta-G solvation = -14690.892811 eV Core-core repulsion = 12264.622687 eV Total energy + Delta-G solvation = -2426.270124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.89885 -38.44782 -35.48318 -34.12364 -33.24173 -31.84079 -28.77209 -26.80242 -25.27501 -25.09700 -23.34118 -21.21916 -18.54323 -18.45614 -17.56726 -16.79151 -16.34818 -16.21887 -15.69724 -15.31312 -14.77904 -14.47837 -14.36295 -13.98525 -13.68442 -13.23899 -12.79510 -12.64139 -12.44608 -11.94536 -11.82299 -11.72908 -11.54886 -11.43056 -11.01567 -10.57265 -10.42352 -10.14739 -8.98331 -8.05618 -6.13682 -0.03850 0.14459 1.44171 1.45215 1.52576 2.45682 2.81685 3.11424 3.23301 3.31763 3.53629 3.88426 4.05589 4.20084 4.44110 4.55619 4.61649 4.62983 4.71217 4.79197 4.86226 5.11062 5.33613 5.42536 5.48506 5.71906 5.75803 5.82319 6.10273 6.31423 6.63283 6.77670 6.96538 7.18047 7.53641 8.99370 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043695 B = 0.006470 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.645252 B = 4326.886427 C = 4609.723609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 C 0.223 3.777 4 H 0.001 0.999 5 C -0.502 4.502 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.680 5.680 14 C 0.108 3.892 15 C 0.171 3.829 16 C -0.219 4.219 17 C 0.149 3.851 18 N -0.540 5.540 19 C 0.283 3.717 20 N -0.536 5.536 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.333 0.667 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.170 0.830 31 H 0.207 0.793 32 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -0.661 13.895 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.019 0.981 5 C -0.541 4.541 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.312 5.312 14 C -0.022 4.022 15 C 0.025 3.975 16 C -0.241 4.241 17 C -0.016 4.016 18 N -0.254 5.254 19 C -0.005 4.005 20 N -0.250 5.250 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.188 0.812 31 H 0.223 0.777 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.585 0.800 13.732 13.997 hybrid contribution -0.358 -1.289 -1.110 1.738 sum -2.943 -0.488 12.623 12.971 Atomic orbital electron populations 1.21492 0.95968 0.99780 1.00752 1.21955 0.96444 0.99510 0.99958 1.18988 0.93808 0.89661 0.86097 0.98110 1.21223 1.30635 1.11355 0.90916 0.93369 1.25540 0.95859 0.95866 1.00942 1.69982 1.39498 1.24760 1.21623 0.85742 0.79002 0.78691 0.78954 1.20430 1.21036 1.19696 1.60683 1.04298 1.63315 1.02896 1.20802 0.96729 0.97489 0.87176 1.21764 0.91089 0.89639 0.95049 1.23067 1.00718 1.04063 0.96247 1.23839 0.92248 0.90225 0.95310 1.68474 1.14781 1.09227 1.32940 1.25466 0.89135 1.01554 0.84305 1.68261 1.22218 1.13013 1.21553 0.93911 0.93608 0.93218 0.91778 0.94758 0.93110 0.84836 0.92427 0.91481 0.81239 0.77681 0.76738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.40 71.98 0.68 -4.17 16 2 C -0.14 -6.18 5.52 30.60 0.17 -6.01 16 3 C 0.22 10.89 2.33 44.17 0.10 10.99 16 4 H 0.00 0.05 7.83 -2.39 -0.02 0.03 16 5 C -0.50 -27.39 7.28 25.60 0.19 -27.21 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 7 C 0.02 0.89 5.30 84.65 0.45 1.34 16 8 N -0.92 -51.85 11.36 21.45 0.24 -51.61 16 9 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 N -0.68 -28.32 6.25 -499.47 -3.12 -31.44 16 14 C 0.11 3.78 5.83 85.56 0.50 4.28 16 15 C 0.17 5.23 6.30 42.58 0.27 5.50 16 16 C -0.22 -4.99 9.84 22.44 0.22 -4.77 16 17 C 0.15 3.00 11.30 84.70 0.96 3.96 16 18 N -0.54 -13.22 10.44 -200.05 -2.09 -15.31 16 19 C 0.28 7.48 12.29 180.88 2.22 9.70 16 20 N -0.54 -17.39 10.38 -188.07 -1.95 -19.34 16 21 H 0.04 1.92 6.88 -2.39 -0.02 1.90 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.05 1.71 6.62 -2.39 -0.02 1.69 16 24 H 0.06 3.28 6.19 -2.39 -0.01 3.27 16 25 H 0.03 1.33 7.40 -2.39 -0.02 1.32 16 26 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.33 12.89 6.54 -89.69 -0.59 12.31 16 28 H 0.06 1.82 7.31 -2.39 -0.02 1.80 16 29 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 30 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.21 2.29 8.06 -2.91 -0.02 2.26 16 32 H 0.22 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -63.51 270.02 1.39 -62.12 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.53 Total: 16.05 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.75 Total: -6.38 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -6.92 Total: -117.70 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -63.51 1.39 -62.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054789952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.836 kcal (2) G-P(sol) polarization free energy of solvation -63.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds