Wall clock time and date at job start Sun Mar 29 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47030 * 2 1 4 4 H 1.09001 * 109.47109 * 174.08729 * 3 2 1 5 5 C 1.50702 * 109.46979 * 54.09044 * 3 2 1 6 6 H 1.07998 * 120.00118 * 240.00564 * 5 3 2 7 7 C 1.37881 * 120.00057 * 59.99824 * 5 3 2 8 8 N 1.31522 * 119.99819 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00052 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47563 * 59.99698 * 9 7 5 11 11 H 1.48504 * 109.47154 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46637 * 299.99592 * 9 7 5 13 13 N 1.46892 * 109.47302 * 294.08858 * 3 2 1 14 14 C 1.46896 * 111.00345 * 275.77612 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.22871 * 14 13 3 16 16 C 1.38613 * 120.45319 * 94.99646 * 15 14 13 17 17 C 1.38577 * 118.40201 * 180.02562 * 16 15 14 18 18 N 1.32348 * 119.10423 * 0.02562 * 17 16 15 19 19 C 1.31780 * 120.81794 * 0.02562 * 18 17 16 20 20 N 1.31809 * 121.75649 * 359.71631 * 19 18 17 21 21 H 1.08998 * 109.46366 * 178.55210 * 1 2 3 22 22 H 1.09002 * 109.46821 * 58.55717 * 1 2 3 23 23 H 1.08996 * 109.47131 * 298.55376 * 1 2 3 24 24 H 1.08999 * 109.47346 * 120.00108 * 2 1 3 25 25 H 1.09003 * 109.47555 * 240.00568 * 2 1 3 26 26 H 0.97002 * 119.99522 * 180.02562 * 8 7 5 27 27 H 1.00902 * 110.99893 * 39.73267 * 13 3 2 28 28 H 1.09006 * 109.46730 * 296.22371 * 14 13 3 29 29 H 1.08996 * 109.47238 * 56.21834 * 14 13 3 30 30 H 1.08003 * 120.79857 * 0.02601 * 16 15 14 31 31 H 1.07999 * 120.44629 * 180.02562 * 17 16 15 32 32 H 1.08005 * 119.12267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1059 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0669 0.9619 7 6 1.6309 1.7666 2.4449 8 7 2.3695 0.7030 2.6750 9 14 0.8639 2.6975 3.8714 10 1 -0.6139 2.6945 3.7270 11 1 1.2383 2.0407 5.1496 12 1 1.3585 4.0978 3.8715 13 7 1.6703 2.0926 -1.2643 14 6 2.6511 1.7940 -2.3163 15 6 2.1916 2.3991 -3.6178 16 6 2.6471 3.6476 -4.0116 17 6 2.1967 4.1637 -5.2163 18 7 1.3519 3.4525 -5.9457 19 6 0.9394 2.2689 -5.5388 20 7 1.3503 1.7443 -4.4016 21 1 -0.3632 -1.0274 -0.0260 22 1 -0.3633 0.5361 -0.8768 23 1 -0.3633 0.4912 0.9026 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 2.5163 0.4022 3.5855 27 1 0.7404 1.8248 -1.5502 28 1 3.6182 2.2150 -2.0414 29 1 2.7441 0.7141 -2.4304 30 1 3.3364 4.2048 -3.3945 31 1 2.5305 5.1333 -5.5553 32 1 0.2501 1.7117 -6.1560 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054789953.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:11 Heat of formation + Delta-G solvation = 42.457778 kcal Electronic energy + Delta-G solvation = -14690.970469 eV Core-core repulsion = 12265.469557 eV Total energy + Delta-G solvation = -2425.500913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82948 -36.71785 -34.09483 -32.65231 -31.74841 -30.23894 -27.05611 -25.15941 -24.23191 -23.25144 -22.08900 -19.32860 -17.43759 -16.95337 -15.89515 -15.30049 -15.05963 -14.71558 -14.36933 -13.70856 -13.55901 -12.88100 -12.65381 -12.33415 -11.97862 -11.65322 -10.91699 -10.81129 -10.76184 -10.54413 -10.53008 -10.02367 -9.89370 -9.56718 -9.44535 -9.15821 -8.97577 -8.36329 -7.33055 -5.99658 -4.01482 1.05090 1.16981 3.33349 3.37767 3.40949 3.88324 4.19163 4.26078 4.43397 4.63527 5.17200 5.20530 5.32203 5.46253 5.58277 5.72491 6.07925 6.12231 6.36329 6.40002 6.51205 6.57181 6.92865 7.12170 7.21056 7.26056 7.50113 7.67439 7.84710 8.19676 8.22685 8.44222 8.55099 9.03161 9.62007 11.07433 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043853 B = 0.006441 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.340154 B = 4345.822937 C = 4595.276458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.676 5.676 14 C 0.101 3.899 15 C 0.192 3.808 16 C -0.208 4.208 17 C 0.140 3.860 18 N -0.532 5.532 19 C 0.288 3.712 20 N -0.518 5.518 21 H 0.023 0.977 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.013 0.987 26 H 0.260 0.740 27 H 0.332 0.668 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 2.858 -11.516 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.053 0.947 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.029 4.029 15 C 0.045 3.955 16 C -0.231 4.231 17 C -0.025 4.025 18 N -0.247 5.247 19 C 0.000 4.000 20 N -0.233 5.233 21 H 0.042 0.958 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.151 0.849 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.167 0.833 31 H 0.182 0.818 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.062 2.835 -11.744 12.082 hybrid contribution -0.056 -0.028 1.109 1.111 sum 0.006 2.807 -10.635 10.999 Atomic orbital electron populations 1.21554 0.97605 0.98094 1.01203 1.22102 0.95168 1.00922 1.00324 1.19244 0.96239 0.88846 0.84796 0.94690 1.20983 1.30717 1.11611 0.89651 0.92091 1.24901 0.95517 0.95159 0.98669 1.69877 1.39113 1.24005 1.20495 0.86612 0.79636 0.79986 0.81463 1.20378 1.21467 1.20339 1.61042 1.03949 1.63032 1.02748 1.20936 0.97567 0.98093 0.86317 1.21976 0.88513 0.90409 0.94561 1.22813 1.03640 0.97782 0.98830 1.23174 0.90500 0.98664 0.90158 1.68362 1.12808 1.08262 1.35262 1.24894 0.95196 0.89202 0.90683 1.68297 1.12177 1.37121 1.05718 0.95822 0.95156 0.91593 0.88876 0.96858 0.93006 0.84937 0.89665 0.93634 0.83345 0.81795 0.79167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 37.16 0.35 -2.41 16 2 C -0.15 -3.39 5.50 -26.73 -0.15 -3.54 16 3 C 0.22 5.22 2.33 -68.87 -0.16 5.06 16 4 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 5 C -0.49 -13.07 7.35 -34.44 -0.25 -13.32 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.57 5.22 -17.81 -0.09 1.48 16 8 N -0.90 -24.86 11.39 55.43 0.63 -24.23 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -14.12 6.24 -109.23 -0.68 -14.80 16 14 C 0.10 1.78 5.84 -4.98 -0.03 1.75 16 15 C 0.19 3.05 6.30 -82.24 -0.52 2.54 16 16 C -0.21 -2.78 9.84 -39.32 -0.39 -3.16 16 17 C 0.14 1.70 11.30 -17.20 -0.19 1.50 16 18 N -0.53 -7.23 10.44 -14.58 -0.15 -7.38 16 19 C 0.29 3.95 12.29 -92.15 -1.13 2.81 16 20 N -0.52 -8.28 10.38 -10.80 -0.11 -8.39 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.03 0.61 6.42 -51.93 -0.33 0.28 16 23 H 0.07 1.56 7.05 -51.93 -0.37 1.19 16 24 H 0.09 2.42 6.25 -51.93 -0.32 2.09 16 25 H 0.01 0.28 7.24 -51.93 -0.38 -0.09 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.33 7.00 6.55 -39.29 -0.26 6.74 16 28 H 0.09 1.41 8.05 -51.93 -0.42 1.00 16 29 H 0.05 0.83 7.23 -51.93 -0.38 0.46 16 30 H 0.15 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.19 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 269.74 15.07 4.06 4.06 Total: -1.00 -28.78 269.74 -7.93 -36.71 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.09 Total: 5.23 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.57 Total: -7.29 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.32 Total: -54.80 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.78 -7.93 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054789953.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.169 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds