Wall clock time and date at job start Sun Mar 29 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47030 * 2 1 4 4 H 1.09001 * 109.47109 * 174.08729 * 3 2 1 5 5 C 1.50702 * 109.46979 * 54.09044 * 3 2 1 6 6 H 1.07998 * 120.00118 * 240.00564 * 5 3 2 7 7 C 1.37881 * 120.00057 * 59.99824 * 5 3 2 8 8 N 1.31522 * 119.99819 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00052 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47563 * 59.99698 * 9 7 5 11 11 H 1.48504 * 109.47154 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46637 * 299.99592 * 9 7 5 13 13 N 1.46892 * 109.47302 * 294.08858 * 3 2 1 14 14 C 1.46896 * 111.00345 * 275.77612 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.22871 * 14 13 3 16 16 C 1.38613 * 120.45319 * 94.99646 * 15 14 13 17 17 C 1.38577 * 118.40201 * 180.02562 * 16 15 14 18 18 N 1.32348 * 119.10423 * 0.02562 * 17 16 15 19 19 C 1.31780 * 120.81794 * 0.02562 * 18 17 16 20 20 N 1.31809 * 121.75649 * 359.71631 * 19 18 17 21 21 H 1.08998 * 109.46366 * 178.55210 * 1 2 3 22 22 H 1.09002 * 109.46821 * 58.55717 * 1 2 3 23 23 H 1.08996 * 109.47131 * 298.55376 * 1 2 3 24 24 H 1.08999 * 109.47346 * 120.00108 * 2 1 3 25 25 H 1.09003 * 109.47555 * 240.00568 * 2 1 3 26 26 H 0.97002 * 119.99522 * 180.02562 * 8 7 5 27 27 H 1.00902 * 110.99893 * 39.73267 * 13 3 2 28 28 H 1.09006 * 109.46730 * 296.22371 * 14 13 3 29 29 H 1.08996 * 109.47238 * 56.21834 * 14 13 3 30 30 H 1.08003 * 120.79857 * 0.02601 * 16 15 14 31 31 H 1.07999 * 120.44629 * 180.02562 * 17 16 15 32 32 H 1.08005 * 119.12267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1059 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0669 0.9619 7 6 1.6309 1.7666 2.4449 8 7 2.3695 0.7030 2.6750 9 14 0.8639 2.6975 3.8714 10 1 -0.6139 2.6945 3.7270 11 1 1.2383 2.0407 5.1496 12 1 1.3585 4.0978 3.8715 13 7 1.6703 2.0926 -1.2643 14 6 2.6511 1.7940 -2.3163 15 6 2.1916 2.3991 -3.6178 16 6 2.6471 3.6476 -4.0116 17 6 2.1967 4.1637 -5.2163 18 7 1.3519 3.4525 -5.9457 19 6 0.9394 2.2689 -5.5388 20 7 1.3503 1.7443 -4.4016 21 1 -0.3632 -1.0274 -0.0260 22 1 -0.3633 0.5361 -0.8768 23 1 -0.3633 0.4912 0.9026 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 2.5163 0.4022 3.5855 27 1 0.7404 1.8248 -1.5502 28 1 3.6182 2.2150 -2.0414 29 1 2.7441 0.7141 -2.4304 30 1 3.3364 4.2048 -3.3945 31 1 2.5305 5.1333 -5.5553 32 1 0.2501 1.7117 -6.1560 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054789953.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:11 Heat of formation + Delta-G solvation = 24.054900 kcal Electronic energy + Delta-G solvation = -14691.768478 eV Core-core repulsion = 12265.469557 eV Total energy + Delta-G solvation = -2426.298921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.89893 -38.44255 -35.48964 -34.08487 -33.26370 -31.84220 -28.78843 -26.79128 -25.27903 -25.10139 -23.34072 -21.21018 -18.60046 -18.36516 -17.53702 -16.78778 -16.41249 -16.27170 -15.70395 -15.30062 -14.77102 -14.48805 -14.37624 -13.85098 -13.73184 -13.26169 -12.78598 -12.62750 -12.45882 -11.94230 -11.86645 -11.77414 -11.56172 -11.42193 -11.02015 -10.54143 -10.42423 -10.19848 -9.03888 -8.05175 -6.13473 -0.01406 0.12045 1.46006 1.46028 1.53748 2.46258 2.81086 3.09168 3.24189 3.32383 3.58084 3.82719 4.10581 4.21994 4.44658 4.53313 4.60218 4.65001 4.70165 4.75567 4.94245 5.10954 5.32008 5.40788 5.48176 5.66062 5.73287 5.80713 6.07190 6.28900 6.60580 6.71344 6.96248 7.14605 7.53790 9.00318 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043853 B = 0.006441 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.340154 B = 4345.822937 C = 4595.276458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.502 4.502 6 H 0.052 0.948 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.106 3.894 15 C 0.170 3.830 16 C -0.208 4.208 17 C 0.148 3.852 18 N -0.539 5.539 19 C 0.283 3.717 20 N -0.543 5.543 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.331 0.669 28 H 0.091 0.909 29 H 0.035 0.965 30 H 0.166 0.834 31 H 0.205 0.795 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 3.951 -12.606 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.026 0.974 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.307 5.307 14 C -0.024 4.024 15 C 0.024 3.976 16 C -0.230 4.230 17 C -0.017 4.017 18 N -0.254 5.254 19 C -0.004 4.004 20 N -0.259 5.259 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.109 0.891 29 H 0.053 0.947 30 H 0.184 0.816 31 H 0.221 0.779 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.428 3.930 -12.846 13.441 hybrid contribution 0.124 -0.342 1.349 1.397 sum -0.304 3.588 -11.497 12.048 Atomic orbital electron populations 1.21434 0.96204 0.99275 1.00590 1.21958 0.96337 1.00124 0.99420 1.18995 0.94301 0.89389 0.85941 0.97442 1.21199 1.30613 1.11499 0.90802 0.93007 1.25562 0.95919 0.95870 1.00857 1.70001 1.40040 1.25080 1.20802 0.85717 0.78949 0.78856 0.78716 1.19926 1.21219 1.19983 1.60885 1.04548 1.62641 1.02662 1.20860 0.97059 0.97801 0.86646 1.21736 0.89981 0.91728 0.94144 1.23017 1.03637 0.96783 0.99588 1.23825 0.89099 0.99658 0.89142 1.68468 1.13144 1.08301 1.35477 1.25450 0.95232 0.89540 0.90209 1.68243 1.12870 1.38017 1.06736 0.93850 0.93902 0.93821 0.91701 0.95694 0.93122 0.85067 0.89053 0.94658 0.81629 0.77851 0.76499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.39 71.98 0.68 -4.36 16 2 C -0.14 -6.51 5.50 30.60 0.17 -6.35 16 3 C 0.22 10.89 2.33 44.17 0.10 10.99 16 4 H 0.01 0.41 7.86 -2.39 -0.02 0.39 16 5 C -0.50 -26.97 7.35 25.60 0.19 -26.78 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.02 0.89 5.22 84.65 0.44 1.33 16 8 N -0.92 -51.71 11.39 21.45 0.24 -51.47 16 9 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.68 -28.21 6.24 -499.48 -3.12 -31.33 16 14 C 0.11 3.73 5.84 85.56 0.50 4.23 16 15 C 0.17 5.22 6.30 42.57 0.27 5.48 16 16 C -0.21 -5.10 9.84 22.44 0.22 -4.88 16 17 C 0.15 3.12 11.30 84.70 0.96 4.08 16 18 N -0.54 -13.21 10.44 -200.05 -2.09 -15.30 16 19 C 0.28 7.19 12.29 180.88 2.22 9.42 16 20 N -0.54 -16.71 10.38 -188.07 -1.95 -18.66 16 21 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.04 1.70 6.42 -2.39 -0.02 1.68 16 23 H 0.04 2.04 7.05 -2.39 -0.02 2.03 16 24 H 0.06 3.43 6.25 -2.39 -0.01 3.42 16 25 H 0.02 1.08 7.24 -2.39 -0.02 1.06 16 26 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.33 13.84 6.55 -89.69 -0.59 13.25 16 28 H 0.09 3.03 8.05 -2.38 -0.02 3.01 16 29 H 0.04 1.30 7.23 -2.39 -0.02 1.28 16 30 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.22 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -61.19 269.74 1.39 -59.81 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.53 Total: 18.50 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.75 Total: -6.84 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -6.91 Total: -116.76 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -61.19 1.39 -59.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054789953.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.861 kcal (2) G-P(sol) polarization free energy of solvation -61.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds