Wall clock time and date at job start Sun Mar 29 2020 22:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47385 * 2 1 4 4 C 1.46501 * 119.99867 * 270.00118 * 3 2 1 5 5 C 1.50695 * 109.47035 * 269.99955 * 4 3 2 6 6 H 1.07997 * 120.00308 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99813 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99631 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00146 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46929 * 90.00083 * 9 7 5 11 11 H 1.48495 * 109.46879 * 210.00189 * 9 7 5 12 12 H 1.48500 * 109.47109 * 330.00478 * 9 7 5 13 13 C 1.38539 * 120.00245 * 89.99772 * 3 2 1 14 14 C 1.39663 * 120.52859 * 5.00249 * 13 3 2 15 15 C 1.38083 * 118.33091 * 179.74208 * 14 13 3 16 16 N 1.32579 * 119.19843 * 0.25550 * 15 14 13 17 17 C 1.31755 * 121.01540 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.08600 * 180.02562 * 17 16 15 19 19 N 1.31785 * 121.83129 * 0.02562 * 17 16 15 20 20 H 1.08998 * 109.47445 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46653 * 300.00107 * 1 2 3 22 22 H 1.09000 * 109.46855 * 59.99700 * 1 2 3 23 23 H 1.08997 * 109.46824 * 239.99613 * 2 1 3 24 24 H 1.09000 * 109.46855 * 120.00300 * 2 1 3 25 25 H 1.09006 * 109.47250 * 30.00049 * 4 3 2 26 26 H 1.09005 * 109.47129 * 150.00245 * 4 3 2 27 27 H 0.97000 * 119.99547 * 180.02562 * 8 7 5 28 28 H 1.08002 * 120.83789 * 0.02562 * 14 13 3 29 29 H 1.07996 * 120.39907 * 180.23007 * 15 14 13 30 30 H 1.09005 * 109.47098 * 89.99547 * 18 17 16 31 31 H 1.08993 * 109.47316 * 209.99938 * 18 17 16 32 32 H 1.09003 * 109.46666 * 329.99949 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 5.3914 2.1832 -3.2574 9 14 3.0131 3.4359 -3.9288 10 1 3.1158 4.8560 -3.5069 11 1 3.4068 3.3135 -5.3554 12 1 1.6135 2.9693 -3.7596 13 6 2.2493 2.0343 1.1998 14 6 2.1205 1.3553 2.4134 15 6 2.3666 2.0490 3.5817 16 7 2.7094 3.3279 3.5145 17 6 2.8181 3.9416 2.3537 18 6 3.2112 5.3961 2.3280 19 7 2.5926 3.3187 1.2144 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.5817 1.6876 -2.0284 26 1 2.0957 3.1410 -1.1384 27 1 5.7176 2.5742 -4.0830 28 1 1.8399 0.3126 2.4374 29 1 2.2804 1.5557 4.5386 30 1 4.2967 5.4783 2.2726 31 1 2.7655 5.8776 1.4577 32 1 2.8556 5.8846 3.2353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054935468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:16 Heat of formation + Delta-G solvation = 52.823564 kcal Electronic energy + Delta-G solvation = -14995.192592 eV Core-core repulsion = 12570.141174 eV Total energy + Delta-G solvation = -2425.051418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34755 -36.98326 -32.98919 -32.72060 -32.05150 -30.25415 -28.14417 -27.10358 -23.55914 -23.33781 -21.81322 -20.10327 -16.96015 -16.94826 -16.79454 -14.90071 -14.76792 -14.58276 -14.21124 -13.97895 -13.22464 -12.94217 -12.65191 -12.34839 -12.17488 -12.00703 -11.92170 -11.51422 -11.09306 -10.78656 -10.62922 -10.50475 -9.99813 -9.98315 -9.51679 -9.09912 -8.62097 -8.48822 -7.13252 -6.11095 -4.09857 1.61172 2.02222 3.26601 3.32447 3.34351 3.55698 4.36950 4.45680 4.60182 4.86188 5.16206 5.24046 5.33068 5.51207 5.57263 5.69765 5.84388 5.89086 5.94392 5.96340 6.08416 6.25518 6.26571 6.39050 6.61007 6.82203 7.06546 7.42770 7.57428 7.94304 8.09439 8.48595 8.90973 8.96151 9.48775 11.02300 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.010390 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.141281 B = 2694.345798 C = 3396.303833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.570 5.570 4 C 0.221 3.779 5 C -0.527 4.527 6 H 0.072 0.928 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.454 3.546 14 C -0.317 4.317 15 C 0.169 3.831 16 N -0.583 5.583 17 C 0.353 3.647 18 C -0.081 4.081 19 N -0.561 5.561 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.043 0.957 27 H 0.264 0.736 28 H 0.134 0.866 29 H 0.155 0.845 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 -1.029 8.968 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.278 5.278 4 C 0.101 3.899 5 C -0.566 4.566 6 H 0.090 0.910 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.209 3.791 14 C -0.346 4.346 15 C 0.007 3.993 16 N -0.304 5.304 17 C 0.083 3.917 18 C -0.139 4.139 19 N -0.285 5.285 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.172 0.828 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.474 -0.184 8.557 12.044 hybrid contribution -0.588 -0.534 -0.712 1.066 sum -9.062 -0.718 7.845 12.007 Atomic orbital electron populations 1.22224 0.96647 1.01603 1.02285 1.21437 0.93360 0.82559 1.03211 1.46804 1.64754 1.12342 1.03877 1.19723 0.97127 0.93587 0.79497 1.21323 0.95289 1.32838 1.07129 0.90985 1.24843 0.94967 0.95828 0.97286 1.69902 1.15163 1.44964 1.23582 0.86850 0.81418 0.81634 0.79767 1.19800 1.21135 1.19171 1.18528 0.85970 0.88132 0.86471 1.22066 1.16605 1.02512 0.93404 1.22622 0.89470 0.89694 0.97471 1.68167 1.22033 1.10896 1.29339 1.22853 0.88999 0.96854 0.82979 1.20478 1.02429 0.87812 1.03201 1.67884 1.21057 1.08767 1.30809 0.91853 0.92859 0.92304 0.89495 0.91147 0.95510 0.93892 0.92566 0.84815 0.82822 0.89960 0.90054 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.12 1.91 6.00 -4.04 -0.02 1.89 16 3 N -0.57 -11.87 2.56 -175.03 -0.45 -12.32 16 4 C 0.22 5.34 4.30 -5.20 -0.02 5.32 16 5 C -0.53 -14.96 9.94 -34.44 -0.34 -15.31 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 9 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.45 9.40 7.39 -154.79 -1.14 8.25 16 14 C -0.32 -5.38 9.33 -39.11 -0.36 -5.74 16 15 C 0.17 2.69 11.29 -17.29 -0.20 2.50 16 16 N -0.58 -10.51 10.33 -10.81 -0.11 -10.62 16 17 C 0.35 6.77 7.64 -157.24 -1.20 5.57 16 18 C -0.08 -1.22 10.32 36.00 0.37 -0.85 16 19 N -0.56 -12.31 9.13 -9.96 -0.09 -12.40 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 24 H 0.07 1.00 6.05 -51.93 -0.31 0.69 16 25 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 26 H 0.04 1.09 6.76 -51.93 -0.35 0.74 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.13 1.88 6.16 -52.49 -0.32 1.56 16 29 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 273.55 15.07 4.12 4.12 Total: -1.00 -32.74 273.55 -7.39 -40.13 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.33 Total: -0.62 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.64 Total: 1.76 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.12 Total: -62.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.74 -7.39 -40.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054935468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.953 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds