Wall clock time and date at job start Sun Mar 29 2020 22:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47385 * 2 1 4 4 C 1.46501 * 119.99867 * 270.00118 * 3 2 1 5 5 C 1.50695 * 109.47035 * 269.99955 * 4 3 2 6 6 H 1.07997 * 120.00308 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99813 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99631 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00146 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46929 * 90.00083 * 9 7 5 11 11 H 1.48495 * 109.46879 * 210.00189 * 9 7 5 12 12 H 1.48500 * 109.47109 * 330.00478 * 9 7 5 13 13 C 1.38539 * 120.00245 * 89.99772 * 3 2 1 14 14 C 1.39663 * 120.52859 * 5.00249 * 13 3 2 15 15 C 1.38083 * 118.33091 * 179.74208 * 14 13 3 16 16 N 1.32579 * 119.19843 * 0.25550 * 15 14 13 17 17 C 1.31755 * 121.01540 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.08600 * 180.02562 * 17 16 15 19 19 N 1.31785 * 121.83129 * 0.02562 * 17 16 15 20 20 H 1.08998 * 109.47445 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46653 * 300.00107 * 1 2 3 22 22 H 1.09000 * 109.46855 * 59.99700 * 1 2 3 23 23 H 1.08997 * 109.46824 * 239.99613 * 2 1 3 24 24 H 1.09000 * 109.46855 * 120.00300 * 2 1 3 25 25 H 1.09006 * 109.47250 * 30.00049 * 4 3 2 26 26 H 1.09005 * 109.47129 * 150.00245 * 4 3 2 27 27 H 0.97000 * 119.99547 * 180.02562 * 8 7 5 28 28 H 1.08002 * 120.83789 * 0.02562 * 14 13 3 29 29 H 1.07996 * 120.39907 * 180.23007 * 15 14 13 30 30 H 1.09005 * 109.47098 * 89.99547 * 18 17 16 31 31 H 1.08993 * 109.47316 * 209.99938 * 18 17 16 32 32 H 1.09003 * 109.46666 * 329.99949 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 5.3914 2.1832 -3.2574 9 14 3.0131 3.4359 -3.9288 10 1 3.1158 4.8560 -3.5069 11 1 3.4068 3.3135 -5.3554 12 1 1.6135 2.9693 -3.7596 13 6 2.2493 2.0343 1.1998 14 6 2.1205 1.3553 2.4134 15 6 2.3666 2.0490 3.5817 16 7 2.7094 3.3279 3.5145 17 6 2.8181 3.9416 2.3537 18 6 3.2112 5.3961 2.3280 19 7 2.5926 3.3187 1.2144 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.5817 1.6876 -2.0284 26 1 2.0957 3.1410 -1.1384 27 1 5.7176 2.5742 -4.0830 28 1 1.8399 0.3126 2.4374 29 1 2.2804 1.5557 4.5386 30 1 4.2967 5.4783 2.2726 31 1 2.7655 5.8776 1.4577 32 1 2.8556 5.8846 3.2353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054935468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:16 Heat of formation + Delta-G solvation = 31.951100 kcal Electronic energy + Delta-G solvation = -14996.097690 eV Core-core repulsion = 12570.141174 eV Total energy + Delta-G solvation = -2425.956516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.75876 -38.46993 -34.91925 -34.28661 -33.38128 -31.89658 -29.53534 -28.74484 -25.19721 -24.67907 -23.39935 -21.58094 -19.09565 -18.45547 -18.23255 -16.44820 -16.33582 -16.08049 -15.73725 -15.40362 -14.65848 -14.55166 -14.12764 -13.90866 -13.62316 -13.33356 -13.17658 -13.10479 -12.66030 -12.42622 -12.22651 -11.99790 -11.81638 -11.61007 -11.35186 -10.82182 -10.52597 -9.95882 -8.66718 -8.33547 -6.38234 0.24904 0.59807 1.32923 1.36248 1.44867 2.10263 2.30827 3.01060 3.05689 3.31327 3.54278 3.91097 4.09392 4.33315 4.35508 4.52730 4.62720 4.67145 4.74794 4.76247 4.82448 4.90589 4.98833 5.02662 5.12431 5.32040 5.45875 5.63905 5.86375 6.17739 6.48949 6.62540 6.67048 7.25064 7.52827 8.83458 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.010390 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.141281 B = 2694.345798 C = 3396.303833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.112 3.888 3 N -0.585 5.585 4 C 0.236 3.764 5 C -0.529 4.529 6 H 0.022 0.978 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.243 1.243 13 C 0.424 3.576 14 C -0.311 4.311 15 C 0.171 3.829 16 N -0.587 5.587 17 C 0.334 3.666 18 C -0.078 4.078 19 N -0.605 5.605 20 H 0.095 0.905 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.268 0.732 28 H 0.165 0.835 29 H 0.202 0.798 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 -1.200 10.069 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.011 4.011 3 N -0.294 5.294 4 C 0.114 3.886 5 C -0.568 4.568 6 H 0.040 0.960 7 C -0.185 4.185 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.167 1.167 13 C 0.181 3.819 14 C -0.339 4.339 15 C 0.010 3.990 16 N -0.308 5.308 17 C 0.065 3.935 18 C -0.136 4.136 19 N -0.330 5.330 20 H 0.114 0.886 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.182 0.818 29 H 0.219 0.781 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.500 -0.377 9.700 14.300 hybrid contribution 0.118 -0.544 -0.908 1.065 sum -10.383 -0.920 8.792 13.636 Atomic orbital electron populations 1.22122 0.94086 1.03525 1.01751 1.21696 0.95354 0.80405 1.03600 1.46833 1.65928 1.13804 1.02863 1.19291 0.94317 0.93396 0.81620 1.21515 0.96945 1.31765 1.06547 0.95982 1.25815 0.96620 0.97231 0.98839 1.70060 1.17490 1.46663 1.24508 0.85707 0.80154 0.79356 0.77662 1.19529 1.20340 1.16679 1.19010 0.86876 0.88476 0.87572 1.22371 1.15627 1.03797 0.92135 1.23425 0.87512 0.89009 0.99085 1.68278 1.21931 1.12009 1.28589 1.23498 0.88917 0.98260 0.82810 1.20571 1.02602 0.86042 1.04415 1.67859 1.22572 1.10060 1.32552 0.88614 0.92654 0.93514 0.90801 0.89102 0.94358 0.95146 0.92335 0.81805 0.78133 0.89655 0.90221 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.11 3.47 6.00 86.38 0.52 3.99 16 3 N -0.59 -24.26 2.56 -707.67 -1.81 -26.07 16 4 C 0.24 11.48 4.30 85.63 0.37 11.85 16 5 C -0.53 -31.02 9.94 25.60 0.25 -30.77 16 6 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 7 C 0.01 0.75 5.47 84.66 0.46 1.21 16 8 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 9 Si 0.95 44.27 27.47 68.60 1.88 46.15 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 13 C 0.42 17.36 7.39 133.18 0.98 18.34 16 14 C -0.31 -9.85 9.33 22.58 0.21 -9.64 16 15 C 0.17 4.93 11.29 84.54 0.95 5.89 16 16 N -0.59 -20.02 10.33 -188.12 -1.94 -21.97 16 17 C 0.33 12.61 7.64 138.76 1.06 13.67 16 18 C -0.08 -2.30 10.32 71.24 0.73 -1.57 16 19 N -0.60 -26.67 9.13 -185.44 -1.69 -28.37 16 20 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 24 H 0.09 2.39 6.05 -2.39 -0.01 2.38 16 25 H 0.04 1.76 7.13 -2.38 -0.02 1.75 16 26 H 0.03 1.55 6.76 -2.38 -0.02 1.54 16 27 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.16 4.03 6.16 -2.91 -0.02 4.01 16 29 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -73.59 273.55 4.07 -69.52 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.05 Total: 10.34 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.29 Total: 9.93 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -5.15 Total: -135.94 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -73.59 4.07 -69.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054935468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.472 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds