Wall clock time and date at job start Sun Mar 29 2020 22:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38386 * 120.00028 * 2 1 4 4 N 1.32124 * 119.99728 * 179.97438 * 3 2 1 5 5 C 1.32149 * 120.00306 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00392 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46940 * 275.00321 * 6 5 4 8 8 C 1.46903 * 110.99799 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.46835 * 34.99594 * 8 7 6 10 10 C 1.53004 * 109.46805 * 274.99566 * 8 7 6 11 11 C 1.50705 * 109.46803 * 154.99862 * 8 7 6 12 12 H 1.07994 * 119.99985 * 359.97438 * 11 8 7 13 13 C 1.37883 * 119.99705 * 179.97438 * 11 8 7 14 14 N 1.31510 * 119.99684 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99956 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.46906 * 90.00155 * 15 13 11 17 17 H 1.48500 * 109.47265 * 210.00322 * 15 13 11 18 18 H 1.48503 * 109.46952 * 330.00479 * 15 13 11 19 19 C 1.38341 * 119.99880 * 0.02562 * 5 4 3 20 20 N 1.32127 * 120.00078 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47037 * 90.00035 * 1 2 3 22 22 H 1.09006 * 109.46818 * 209.99333 * 1 2 3 23 23 H 1.09000 * 109.47469 * 329.99759 * 1 2 3 24 24 H 1.08005 * 120.00221 * 0.02562 * 3 2 1 25 25 H 1.09005 * 109.46577 * 34.99680 * 6 5 4 26 26 H 1.08993 * 109.47521 * 154.99893 * 6 5 4 27 27 H 1.00907 * 111.00133 * 303.94720 * 7 6 5 28 28 H 1.08997 * 109.47201 * 300.00103 * 10 8 7 29 29 H 1.08994 * 109.47184 * 60.00171 * 10 8 7 30 30 H 1.08999 * 109.46881 * 180.02562 * 10 8 7 31 31 H 0.97000 * 119.99554 * 179.97438 * 14 13 11 32 32 H 1.08010 * 119.99675 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5201 1.1984 0.0005 5 6 4.1809 0.0539 0.0005 6 6 5.6879 0.0538 0.0005 7 7 6.1776 0.1746 -1.3792 8 6 7.6461 0.1785 -1.4182 9 1 8.0319 -0.4809 -0.6408 10 6 8.1587 1.6006 -1.1815 11 6 8.1140 -0.3063 -2.7662 12 1 7.3928 -0.5894 -3.5185 13 6 9.4631 -0.3884 -3.0391 14 7 10.3414 -0.0441 -2.1227 15 14 10.0432 -0.9900 -4.7096 16 1 10.1800 0.1659 -5.6318 17 1 11.3578 -1.6650 -4.5636 18 1 9.0529 -1.9491 -5.2616 19 6 3.4892 -1.1441 -0.0006 20 7 2.1676 -1.1442 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6589 2.1338 0.0004 25 1 6.0512 0.8957 0.5900 26 1 6.0513 -0.8775 0.4348 27 1 5.8021 -0.5588 -1.9617 28 1 7.7728 2.2600 -1.9589 29 1 7.8202 1.9513 -0.2066 30 1 9.2483 1.6036 -1.2109 31 1 11.2904 -0.1022 -2.3146 32 1 4.0292 -2.0795 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061321185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:34 Heat of formation + Delta-G solvation = 17.835150 kcal Electronic energy + Delta-G solvation = -14370.137946 eV Core-core repulsion = 11943.569316 eV Total energy + Delta-G solvation = -2426.568630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09285 -37.94151 -35.70183 -34.64872 -33.60806 -31.15901 -28.76461 -27.34000 -25.62775 -25.50867 -22.85064 -21.76631 -18.86214 -18.61772 -17.20156 -16.89235 -16.55509 -16.16764 -15.78304 -15.28411 -14.79205 -14.15394 -13.79013 -13.60557 -13.44746 -13.22662 -13.02896 -12.78183 -12.67782 -12.49538 -12.27524 -12.20781 -12.07652 -11.95372 -10.92790 -10.58468 -10.02280 -9.99106 -9.11894 -8.13935 -6.28175 -0.21374 0.16791 1.42846 1.44041 1.53949 2.41109 2.66056 3.07459 3.15009 3.25341 3.49321 3.69325 3.91556 4.11786 4.24461 4.48813 4.61111 4.69290 4.80458 4.85949 4.89888 5.07843 5.13373 5.19187 5.43556 5.48607 5.64828 5.82797 6.19965 6.34855 6.40968 6.69952 6.85886 6.94730 7.42004 8.91830 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051655 B = 0.005481 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.924203 B = 5107.109111 C = 5354.265936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.068 3.932 3 C 0.049 3.951 4 N -0.449 5.449 5 C 0.072 3.928 6 C 0.116 3.884 7 N -0.680 5.680 8 C 0.217 3.783 9 H -0.020 1.020 10 C -0.113 4.113 11 C -0.539 4.539 12 H 0.058 0.942 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.963 3.037 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.054 3.946 20 N -0.458 5.458 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.200 0.800 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.332 0.668 28 H 0.024 0.976 29 H 0.021 0.979 30 H 0.060 0.940 31 H 0.263 0.737 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.688 -0.354 4.650 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.113 4.113 4 N -0.164 5.164 5 C -0.067 4.067 6 C -0.015 4.015 7 N -0.312 5.312 8 C 0.109 3.891 9 H -0.002 1.002 10 C -0.172 4.172 11 C -0.577 4.577 12 H 0.076 0.924 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.788 3.212 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.105 4.105 20 N -0.174 5.174 21 H 0.111 0.889 22 H 0.098 0.902 23 H 0.125 0.875 24 H 0.217 0.783 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.502 0.332 4.688 17.158 hybrid contribution 1.053 -1.109 -0.560 1.629 sum -15.449 -0.777 4.127 16.009 Atomic orbital electron populations 1.20792 0.84725 1.05162 1.04512 1.23013 1.00338 0.89211 0.94824 1.24246 0.89884 1.00779 0.96342 1.68250 1.09966 1.30117 1.08044 1.22116 0.97469 0.90010 0.97116 1.20678 0.87446 1.01095 0.92237 1.60611 1.10242 1.52468 1.07874 1.18948 0.82202 0.93003 0.94939 1.00238 1.21546 1.01507 0.97303 0.96799 1.21539 0.92284 1.44168 0.99727 0.92411 1.25706 0.96785 0.95283 1.00619 1.70014 1.01796 1.48544 1.35166 0.85481 0.77595 0.78436 0.79638 1.20302 1.20717 1.19216 1.23768 0.90805 0.99485 0.96420 1.68369 1.08509 1.30413 1.10086 0.88888 0.90209 0.87521 0.78311 0.90900 0.92962 0.85049 0.95726 0.95993 0.92173 0.92736 0.80195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 10.19 71.23 0.73 -0.49 16 2 C 0.07 1.53 6.79 42.55 0.29 1.82 16 3 C 0.05 1.18 10.88 84.68 0.92 2.10 16 4 N -0.45 -14.59 10.42 -183.29 -1.91 -16.50 16 5 C 0.07 2.37 6.30 42.54 0.27 2.63 16 6 C 0.12 4.27 5.81 85.56 0.50 4.77 16 7 N -0.68 -29.78 6.29 -499.44 -3.14 -32.93 16 8 C 0.22 11.18 2.60 44.17 0.11 11.30 16 9 H -0.02 -1.10 7.80 -2.39 -0.02 -1.12 16 10 C -0.11 -5.81 9.19 71.98 0.66 -5.15 16 11 C -0.54 -29.76 8.59 25.60 0.22 -29.54 16 12 H 0.06 3.14 7.62 -2.91 -0.02 3.12 16 13 C 0.02 0.86 5.30 84.66 0.45 1.31 16 14 N -0.92 -52.64 11.32 21.45 0.24 -52.40 16 15 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 C 0.05 1.57 10.86 84.67 0.92 2.49 16 20 N -0.46 -12.57 10.42 -183.29 -1.91 -14.48 16 21 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 22 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.11 0.78 8.09 -2.39 -0.02 0.76 16 24 H 0.20 3.15 8.06 -2.91 -0.02 3.12 16 25 H 0.07 2.83 7.44 -2.38 -0.02 2.82 16 26 H 0.05 1.80 7.97 -2.39 -0.02 1.78 16 27 H 0.33 14.15 8.22 -89.69 -0.74 13.41 16 28 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 30 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.18 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -65.19 275.33 0.75 -64.44 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.38 Total: 15.14 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.07 Total: -8.76 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -6.72 Total: -116.30 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.19 0.75 -64.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061321185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.277 kcal (2) G-P(sol) polarization free energy of solvation -65.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds