Wall clock time and date at job start Sun Mar 29 2020 22:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47253 * 2 1 4 4 C 1.46493 * 120.00124 * 270.00325 * 3 2 1 5 5 C 1.50697 * 109.47360 * 269.99321 * 4 3 2 6 6 H 1.08005 * 119.99779 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00467 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99865 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00050 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47125 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46966 * 120.00453 * 9 7 5 12 12 H 1.48503 * 109.47108 * 240.00089 * 9 7 5 13 13 C 1.38413 * 119.99592 * 89.99818 * 3 2 1 14 14 N 1.32507 * 119.21392 * 180.02562 * 13 3 2 15 15 C 1.32258 * 120.74103 * 179.97438 * 14 13 3 16 16 C 1.38627 * 119.19174 * 0.02562 * 15 14 13 17 17 C 1.38583 * 118.56118 * 359.97438 * 16 15 14 18 18 C 1.50706 * 120.39905 * 180.02562 * 17 16 15 19 19 N 1.32280 * 119.19846 * 0.27668 * 17 16 15 20 20 H 1.08997 * 109.47368 * 299.99588 * 1 2 3 21 21 H 1.09001 * 109.46897 * 60.00375 * 1 2 3 22 22 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47368 * 240.00412 * 2 1 3 24 24 H 1.08995 * 109.47471 * 120.00313 * 2 1 3 25 25 H 1.09005 * 109.47199 * 29.99853 * 4 3 2 26 26 H 1.09001 * 109.47012 * 149.99202 * 4 3 2 27 27 H 0.97000 * 120.00504 * 179.97438 * 8 7 5 28 28 H 1.07995 * 120.40771 * 180.02562 * 15 14 13 29 29 H 1.08007 * 120.71910 * 180.02562 * 16 15 14 30 30 H 1.08999 * 109.47015 * 90.00484 * 18 17 16 31 31 H 1.09000 * 109.46646 * 209.99636 * 18 17 16 32 32 H 1.09000 * 109.47248 * 330.00354 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3427 1.2304 -1.0961 7 6 4.1491 2.3899 -2.8779 8 7 3.3490 3.1259 -3.6180 9 14 5.9131 2.0959 -3.4174 10 1 6.6005 1.2399 -2.4174 11 1 5.9201 1.4167 -4.7381 12 1 6.6209 3.3969 -3.5261 13 6 2.2490 2.0337 1.1987 14 7 2.6902 3.2830 1.1807 15 6 2.9202 3.9351 2.3081 16 6 2.6946 3.2956 3.5172 17 6 2.2332 1.9890 3.4996 18 6 1.9735 1.2546 4.7898 19 7 2.0282 1.3926 2.3369 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.5816 1.6878 -2.0283 26 1 2.0954 3.1411 -1.1383 27 1 3.6750 3.5164 -4.4439 28 1 3.2793 4.9534 2.2870 29 1 2.8738 3.8050 4.4526 30 1 0.9418 1.4197 5.1005 31 1 2.1417 0.1880 4.6408 32 1 2.6489 1.6249 5.5610 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061858719.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:25 Heat of formation + Delta-G solvation = 51.817253 kcal Electronic energy + Delta-G solvation = -14925.153766 eV Core-core repulsion = 12500.058711 eV Total energy + Delta-G solvation = -2425.095055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25929 -36.45818 -33.70677 -32.76321 -31.43336 -29.98620 -27.85825 -26.67897 -23.53678 -23.18060 -21.97937 -20.11834 -16.96074 -16.62839 -16.17487 -14.95444 -14.74451 -14.55069 -13.99634 -13.77072 -13.17347 -12.88821 -12.65707 -12.40455 -12.07774 -11.95370 -11.62110 -11.17588 -10.88081 -10.59918 -10.43720 -10.20380 -10.05971 -9.96609 -9.79649 -9.11763 -8.45137 -8.27822 -6.98148 -6.00672 -4.06450 1.81783 1.88502 3.30090 3.37418 3.41895 3.65004 4.44333 4.58939 4.68540 5.02943 5.30605 5.32998 5.59588 5.66404 5.67284 5.74963 5.76558 5.85771 5.94537 6.10363 6.27265 6.33624 6.41257 6.68147 6.88668 7.14373 7.46713 7.69672 7.86206 7.97939 8.26515 8.42467 8.93402 9.15640 9.57981 11.05353 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.008613 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.790646 B = 3249.978395 C = 3742.418788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 N -0.561 5.561 4 C 0.256 3.744 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.574 3.426 14 N -0.550 5.550 15 C 0.191 3.809 16 C -0.323 4.323 17 C 0.207 3.793 18 C -0.100 4.100 19 N -0.584 5.584 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.262 0.738 28 H 0.156 0.844 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -2.580 12.522 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.004 3.996 3 N -0.272 5.272 4 C 0.137 3.863 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.219 3.781 14 N -0.272 5.272 15 C 0.020 3.980 16 C -0.350 4.350 17 C 0.058 3.942 18 C -0.157 4.157 19 N -0.310 5.310 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.173 0.827 29 H 0.147 0.853 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.705 -3.095 11.187 12.184 hybrid contribution 1.212 0.467 0.374 1.351 sum -2.494 -2.628 11.561 12.115 Atomic orbital electron populations 1.22131 0.97042 1.01057 1.01825 1.21259 0.93233 0.82603 1.02508 1.46937 1.64477 1.12651 1.03150 1.19357 0.96159 0.93720 0.77112 1.21476 0.96879 1.31523 1.06101 0.92638 1.24899 0.97718 0.95011 0.96355 1.69938 1.35502 1.33660 1.14352 0.86473 0.84803 0.77989 0.78325 1.19937 1.20977 1.20902 1.19393 0.86959 0.85574 0.86171 1.68132 1.19324 1.08895 1.30831 1.22874 0.89362 0.98682 0.87040 1.22094 1.14683 0.98146 1.00076 1.21214 0.88906 0.90967 0.93128 1.20678 1.02258 1.00672 0.92109 1.67730 1.26635 1.38997 0.97603 0.92998 0.92713 0.92407 0.90489 0.90768 0.94981 0.93224 0.92823 0.82650 0.85257 0.90474 0.90635 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.45 6.13 -4.04 -0.02 2.42 16 3 N -0.56 -12.92 2.56 -177.41 -0.45 -13.37 16 4 C 0.26 6.79 5.16 -5.20 -0.03 6.76 16 5 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 C 0.57 12.92 8.17 -322.80 -2.64 10.28 16 14 N -0.55 -12.44 9.11 -13.93 -0.13 -12.57 16 15 C 0.19 3.39 11.30 -17.22 -0.19 3.19 16 16 C -0.32 -4.95 9.85 -39.31 -0.39 -5.33 16 17 C 0.21 3.38 6.82 -82.27 -0.56 2.82 16 18 C -0.10 -1.13 10.22 36.01 0.37 -0.76 16 19 N -0.58 -11.52 9.05 -10.15 -0.09 -11.61 16 20 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 24 H 0.07 1.37 7.33 -51.93 -0.38 0.99 16 25 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 26 H 0.05 1.44 7.33 -51.93 -0.38 1.06 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 LS Contribution 279.45 15.07 4.21 4.21 Total: -1.00 -32.09 279.45 -8.78 -40.87 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.52 Total: -2.29 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -3.51 Total: 3.56 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.06 Total: -63.35 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.09 -8.78 -40.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061858719.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.686 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds