Wall clock time and date at job start Sun Mar 29 2020 22:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47253 * 2 1 4 4 C 1.46493 * 120.00124 * 270.00325 * 3 2 1 5 5 C 1.50697 * 109.47360 * 269.99321 * 4 3 2 6 6 H 1.08005 * 119.99779 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00467 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99865 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00050 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47125 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46966 * 120.00453 * 9 7 5 12 12 H 1.48503 * 109.47108 * 240.00089 * 9 7 5 13 13 C 1.38413 * 119.99592 * 89.99818 * 3 2 1 14 14 N 1.32507 * 119.21392 * 180.02562 * 13 3 2 15 15 C 1.32258 * 120.74103 * 179.97438 * 14 13 3 16 16 C 1.38627 * 119.19174 * 0.02562 * 15 14 13 17 17 C 1.38583 * 118.56118 * 359.97438 * 16 15 14 18 18 C 1.50706 * 120.39905 * 180.02562 * 17 16 15 19 19 N 1.32280 * 119.19846 * 0.27668 * 17 16 15 20 20 H 1.08997 * 109.47368 * 299.99588 * 1 2 3 21 21 H 1.09001 * 109.46897 * 60.00375 * 1 2 3 22 22 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47368 * 240.00412 * 2 1 3 24 24 H 1.08995 * 109.47471 * 120.00313 * 2 1 3 25 25 H 1.09005 * 109.47199 * 29.99853 * 4 3 2 26 26 H 1.09001 * 109.47012 * 149.99202 * 4 3 2 27 27 H 0.97000 * 120.00504 * 179.97438 * 8 7 5 28 28 H 1.07995 * 120.40771 * 180.02562 * 15 14 13 29 29 H 1.08007 * 120.71910 * 180.02562 * 16 15 14 30 30 H 1.08999 * 109.47015 * 90.00484 * 18 17 16 31 31 H 1.09000 * 109.46646 * 209.99636 * 18 17 16 32 32 H 1.09000 * 109.47248 * 330.00354 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3427 1.2304 -1.0961 7 6 4.1491 2.3899 -2.8779 8 7 3.3490 3.1259 -3.6180 9 14 5.9131 2.0959 -3.4174 10 1 6.6005 1.2399 -2.4174 11 1 5.9201 1.4167 -4.7381 12 1 6.6209 3.3969 -3.5261 13 6 2.2490 2.0337 1.1987 14 7 2.6902 3.2830 1.1807 15 6 2.9202 3.9351 2.3081 16 6 2.6946 3.2956 3.5172 17 6 2.2332 1.9890 3.4996 18 6 1.9735 1.2546 4.7898 19 7 2.0282 1.3926 2.3369 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.5816 1.6878 -2.0283 26 1 2.0954 3.1411 -1.1383 27 1 3.6750 3.5164 -4.4439 28 1 3.2793 4.9534 2.2870 29 1 2.8738 3.8050 4.4526 30 1 0.9418 1.4197 5.1005 31 1 2.1417 0.1880 4.6408 32 1 2.6489 1.6249 5.5610 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061858719.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:24 Heat of formation + Delta-G solvation = 33.723250 kcal Electronic energy + Delta-G solvation = -14925.938381 eV Core-core repulsion = 12500.058711 eV Total energy + Delta-G solvation = -2425.879670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.70890 -38.08480 -35.09919 -34.86754 -32.82361 -31.62320 -29.10130 -28.55391 -25.14501 -24.95760 -23.35127 -21.71619 -18.67022 -18.42657 -17.92714 -16.61035 -16.22362 -16.15553 -15.49746 -15.24367 -14.69599 -14.36245 -14.00627 -13.81962 -13.53702 -13.28090 -13.06088 -13.00397 -12.71983 -12.52570 -12.21605 -11.82514 -11.79310 -11.55715 -11.36915 -10.73751 -10.62776 -9.78488 -8.67300 -8.13312 -6.33883 0.46135 0.47085 1.35766 1.36789 1.49105 2.06269 2.39507 3.08702 3.13807 3.42414 3.77942 3.92092 4.21655 4.41968 4.49014 4.55743 4.59695 4.76745 4.83881 4.86316 4.96823 5.00011 5.09444 5.21109 5.24947 5.33798 5.62760 5.74361 6.06357 6.18660 6.28193 6.71510 6.85487 7.33583 7.64062 8.86708 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.008613 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.790646 B = 3249.978395 C = 3742.418788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.127 3.873 3 N -0.580 5.580 4 C 0.280 3.720 5 C -0.534 4.534 6 H 0.041 0.959 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.270 1.270 12 H -0.277 1.277 13 C 0.551 3.449 14 N -0.604 5.604 15 C 0.171 3.829 16 C -0.300 4.300 17 C 0.192 3.808 18 C -0.093 4.093 19 N -0.592 5.592 20 H 0.044 0.956 21 H 0.040 0.960 22 H 0.091 0.909 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.267 0.733 28 H 0.184 0.816 29 H 0.177 0.823 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 -2.951 14.704 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.005 3.995 3 N -0.294 5.294 4 C 0.158 3.842 5 C -0.573 4.573 6 H 0.060 0.940 7 C -0.186 4.186 8 N -0.566 5.566 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.196 1.196 12 H -0.202 1.202 13 C 0.196 3.804 14 N -0.327 5.327 15 C 0.004 3.996 16 C -0.326 4.326 17 C 0.044 3.956 18 C -0.150 4.150 19 N -0.318 5.318 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.110 0.890 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.201 0.799 29 H 0.194 0.806 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.082 -3.453 13.439 14.214 hybrid contribution 0.999 0.642 -0.122 1.194 sum -2.083 -2.811 13.318 13.770 Atomic orbital electron populations 1.22008 0.94964 1.02906 1.00758 1.21383 0.94895 0.80942 1.02327 1.46769 1.66358 1.13780 1.02448 1.18730 0.94819 0.92017 0.78620 1.21635 0.97737 1.31573 1.06333 0.94026 1.25741 1.02036 0.94549 0.96263 1.70043 1.37471 1.34287 1.14799 0.85420 0.79426 0.78045 0.78174 1.19909 1.19556 1.20244 1.19539 0.88154 0.86011 0.86727 1.68068 1.21227 1.09751 1.33672 1.23496 0.89255 0.99906 0.86980 1.22585 1.11476 0.97621 1.00912 1.22219 0.87704 0.91966 0.93722 1.20812 1.04195 1.00079 0.89944 1.67794 1.26938 1.39234 0.97841 0.93643 0.94047 0.88983 0.91275 0.90129 0.96686 0.96577 0.92388 0.79943 0.80582 0.88551 0.90763 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 10.24 71.98 0.74 -4.09 16 2 C 0.13 4.98 6.13 86.38 0.53 5.51 16 3 N -0.58 -27.79 2.56 -715.20 -1.83 -29.62 16 4 C 0.28 15.63 5.16 85.63 0.44 16.07 16 5 C -0.53 -31.63 9.39 25.60 0.24 -31.39 16 6 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 7 C 0.01 0.76 5.46 84.65 0.46 1.22 16 8 N -0.93 -56.15 13.29 21.44 0.28 -55.87 16 9 Si 0.96 45.69 29.54 68.60 2.03 47.71 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.55 25.33 8.17 261.48 2.14 27.46 16 14 N -0.60 -27.96 9.11 -197.98 -1.80 -29.77 16 15 C 0.17 5.89 11.30 84.72 0.96 6.85 16 16 C -0.30 -8.27 9.85 22.45 0.22 -8.05 16 17 C 0.19 5.77 6.82 42.58 0.29 6.06 16 18 C -0.09 -1.73 10.22 71.24 0.73 -1.01 16 19 N -0.59 -22.99 9.05 -186.04 -1.68 -24.67 16 20 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 22 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 24 H 0.08 2.99 7.33 -2.39 -0.02 2.97 16 25 H 0.02 0.87 8.07 -2.38 -0.02 0.86 16 26 H 0.02 1.00 7.33 -2.39 -0.02 0.98 16 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.18 4.94 8.06 -2.91 -0.02 4.92 16 29 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.11 1.34 8.09 -2.39 -0.02 1.32 16 Total: -1.00 -72.26 279.45 4.83 -67.43 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.09 Total: 6.14 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 6.75 Total: 18.65 kcal Atomic # 7 Polarization: -134.89 SS G_CDS: -5.03 Total: -139.92 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.26 4.83 -67.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061858719.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.151 kcal (2) G-P(sol) polarization free energy of solvation -72.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds