Wall clock time and date at job start Sun Mar 29 2020 22:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39670 * 119.99772 * 2 1 4 4 C 1.38968 * 120.04903 * 359.97438 * 3 2 1 5 5 C 1.38109 * 120.03940 * 180.02562 * 4 3 2 6 6 C 1.38219 * 120.12513 * 0.02562 * 5 4 3 7 7 C 1.38763 * 120.09557 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.01858 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00333 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.47388 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47250 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99474 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00114 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99920 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00059 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46912 * 90.00112 * 15 13 11 17 17 H 1.48499 * 109.47506 * 210.00258 * 15 13 11 18 18 H 1.48496 * 109.47018 * 330.00214 * 15 13 11 19 19 C 1.38615 * 119.96317 * 0.02562 * 7 6 5 20 20 H 1.09004 * 109.46590 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47571 * 299.99875 * 1 2 3 22 22 H 1.08995 * 109.47132 * 60.00542 * 1 2 3 23 23 H 0.97004 * 120.00251 * 179.97438 * 2 1 3 24 24 H 1.08000 * 119.97882 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.93688 * 179.97438 * 5 4 3 26 26 H 1.08001 * 119.94927 * 180.02562 * 6 5 4 27 27 H 1.09000 * 109.47162 * 300.00657 * 9 8 7 28 28 H 1.09006 * 109.46740 * 60.00391 * 9 8 7 29 29 H 1.09000 * 109.47527 * 300.00459 * 10 9 8 30 30 H 1.09006 * 109.46840 * 60.00478 * 10 9 8 31 31 H 0.97004 * 119.99827 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.06326 * 179.72840 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4694 2.4137 -0.0005 5 6 2.1601 3.6096 -0.0011 6 6 3.5423 3.6125 -0.0016 7 6 4.2406 2.4133 -0.0011 8 8 5.5995 2.4180 -0.0021 9 6 6.2440 3.6933 -0.0032 10 6 7.7615 3.4980 -0.0036 11 6 8.4411 4.8431 -0.0041 12 1 7.8498 5.7468 -0.0046 13 6 9.8177 4.9199 -0.0051 14 7 10.5377 3.8194 -0.0061 15 14 10.6601 6.5872 -0.0065 16 1 10.8843 7.0295 1.3932 17 1 11.9650 6.4820 -0.7074 18 1 9.8007 7.5754 -0.7063 19 6 3.5512 1.2108 -0.0005 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.9500 -0.8401 0.0004 24 1 0.3894 2.4141 -0.0005 25 1 1.6192 4.5444 -0.0019 26 1 4.0796 4.5494 -0.0016 27 1 5.9485 4.2490 -0.8931 28 1 5.9500 4.2497 0.8869 29 1 8.0566 2.9425 0.8865 30 1 8.0559 2.9415 -0.8935 31 1 11.5062 3.8734 -0.0072 32 1 4.0931 0.2765 -0.0046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062796572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:16 Heat of formation + Delta-G solvation = -22.999129 kcal Electronic energy + Delta-G solvation = -14085.689695 eV Core-core repulsion = 11625.057607 eV Total energy + Delta-G solvation = -2460.632088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.70002 -37.69308 -34.88266 -33.31149 -30.87522 -29.81083 -28.65604 -26.02124 -24.76202 -22.53829 -21.48062 -20.28094 -17.97443 -16.54764 -16.18771 -15.52959 -15.26595 -15.23999 -14.60751 -14.29751 -14.07010 -13.37538 -12.67105 -12.59694 -12.39734 -12.24609 -11.52473 -11.51138 -11.16006 -10.89096 -10.72226 -10.41177 -9.99934 -9.70003 -9.61299 -9.26275 -8.42365 -7.91861 -7.31774 -6.07547 -4.11944 1.74064 1.89907 3.29576 3.33331 3.36152 3.39470 4.05361 4.15034 4.45111 4.97231 5.11501 5.28879 5.29388 5.36388 5.51852 5.57478 5.62629 5.80832 6.11221 6.12265 6.14244 6.43267 6.65157 6.69641 6.77622 6.91666 7.40115 7.55158 7.68390 7.68518 7.86635 8.14819 8.27973 8.93784 9.52216 11.04105 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.075405 B = 0.004604 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.239628 B = 6079.685876 C = 6425.177612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.755 5.755 3 C 0.242 3.758 4 C -0.244 4.244 5 C -0.037 4.037 6 C -0.264 4.264 7 C 0.187 3.813 8 O -0.316 6.316 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.526 4.526 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.238 4.238 20 H 0.069 0.931 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.400 0.600 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.127 0.873 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.361 -4.939 0.006 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.386 5.386 3 C 0.140 3.860 4 C -0.267 4.267 5 C -0.056 4.056 6 C -0.284 4.284 7 C 0.139 3.861 8 O -0.229 6.229 9 C -0.008 4.008 10 C -0.012 4.012 11 C -0.564 4.564 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.262 4.262 20 H 0.088 0.912 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.233 0.767 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.145 0.855 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.237 -5.124 0.000 18.943 hybrid contribution 0.634 0.771 0.009 0.998 sum -17.603 -4.353 0.009 18.133 Atomic orbital electron populations 1.21468 0.80445 1.01920 1.00983 1.44377 1.05447 1.05385 1.83359 1.17405 0.90138 0.86143 0.92335 1.20393 0.99050 0.91116 1.16097 1.20624 0.93362 0.97102 0.94540 1.21154 0.95072 0.97565 1.14651 1.18821 0.83557 0.93139 0.90587 1.86144 1.15059 1.34999 1.86705 1.23317 0.96354 0.81367 0.99765 1.19130 0.85264 0.98029 0.98826 1.20987 0.91493 0.91824 1.52080 0.92336 1.24990 0.97405 0.96869 0.94949 1.69980 1.05926 1.27103 1.49829 0.86484 0.78909 0.83775 0.78201 1.20509 1.21078 1.19747 1.19684 0.91553 0.97030 1.17895 0.91186 0.93140 0.93145 0.76666 0.86656 0.86320 0.85544 0.93075 0.93086 0.95434 0.95424 0.92741 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 9.94 59.85 0.59 1.33 16 2 N -0.76 -8.00 5.89 -65.42 -0.39 -8.38 16 3 C 0.24 3.39 6.65 -83.81 -0.56 2.83 16 4 C -0.24 -3.28 9.31 -39.36 -0.37 -3.64 16 5 C -0.04 -0.53 10.03 -39.64 -0.40 -0.93 16 6 C -0.26 -4.43 9.04 -39.39 -0.36 -4.78 16 7 C 0.19 3.47 6.68 -39.25 -0.26 3.21 16 8 O -0.32 -6.82 10.13 -19.41 -0.20 -7.01 16 9 C 0.07 1.47 4.68 37.16 0.17 1.64 16 10 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 11 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 19 C -0.24 -3.88 9.83 -39.24 -0.39 -4.27 16 20 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.05 0.38 7.95 -51.93 -0.41 -0.03 16 22 H 0.05 0.38 7.95 -51.93 -0.41 -0.03 16 23 H 0.40 3.61 8.84 -40.82 -0.36 3.25 16 24 H 0.12 1.27 6.73 -52.49 -0.35 0.92 16 25 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.13 2.09 6.29 -52.49 -0.33 1.76 16 27 H 0.05 1.08 7.66 -51.93 -0.40 0.69 16 28 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 275.90 15.07 4.16 4.16 Total: -1.00 -31.22 275.90 -7.15 -38.37 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.32 Total: 0.11 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.12 Total: -17.66 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.35 Total: -34.41 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.20 Total: -7.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.22 -7.15 -38.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062796572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.369 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds