Wall clock time and date at job start Sun Mar 29 2020 22:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39670 * 119.99772 * 2 1 4 4 C 1.38968 * 120.04903 * 359.97438 * 3 2 1 5 5 C 1.38109 * 120.03940 * 180.02562 * 4 3 2 6 6 C 1.38219 * 120.12513 * 0.02562 * 5 4 3 7 7 C 1.38763 * 120.09557 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.01858 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00333 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.47388 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47250 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99474 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00114 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99920 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00059 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46912 * 90.00112 * 15 13 11 17 17 H 1.48499 * 109.47506 * 210.00258 * 15 13 11 18 18 H 1.48496 * 109.47018 * 330.00214 * 15 13 11 19 19 C 1.38615 * 119.96317 * 0.02562 * 7 6 5 20 20 H 1.09004 * 109.46590 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47571 * 299.99875 * 1 2 3 22 22 H 1.08995 * 109.47132 * 60.00542 * 1 2 3 23 23 H 0.97004 * 120.00251 * 179.97438 * 2 1 3 24 24 H 1.08000 * 119.97882 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.93688 * 179.97438 * 5 4 3 26 26 H 1.08001 * 119.94927 * 180.02562 * 6 5 4 27 27 H 1.09000 * 109.47162 * 300.00657 * 9 8 7 28 28 H 1.09006 * 109.46740 * 60.00391 * 9 8 7 29 29 H 1.09000 * 109.47527 * 300.00459 * 10 9 8 30 30 H 1.09006 * 109.46840 * 60.00478 * 10 9 8 31 31 H 0.97004 * 119.99827 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.06326 * 179.72840 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4694 2.4137 -0.0005 5 6 2.1601 3.6096 -0.0011 6 6 3.5423 3.6125 -0.0016 7 6 4.2406 2.4133 -0.0011 8 8 5.5995 2.4180 -0.0021 9 6 6.2440 3.6933 -0.0032 10 6 7.7615 3.4980 -0.0036 11 6 8.4411 4.8431 -0.0041 12 1 7.8498 5.7468 -0.0046 13 6 9.8177 4.9199 -0.0051 14 7 10.5377 3.8194 -0.0061 15 14 10.6601 6.5872 -0.0065 16 1 10.8843 7.0295 1.3932 17 1 11.9650 6.4820 -0.7074 18 1 9.8007 7.5754 -0.7063 19 6 3.5512 1.2108 -0.0005 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.9500 -0.8401 0.0004 24 1 0.3894 2.4141 -0.0005 25 1 1.6192 4.5444 -0.0019 26 1 4.0796 4.5494 -0.0016 27 1 5.9485 4.2490 -0.8931 28 1 5.9500 4.2497 0.8869 29 1 8.0566 2.9425 0.8865 30 1 8.0559 2.9415 -0.8935 31 1 11.5062 3.8734 -0.0072 32 1 4.0931 0.2765 -0.0046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062796572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:16 Heat of formation + Delta-G solvation = -43.168913 kcal Electronic energy + Delta-G solvation = -14086.564323 eV Core-core repulsion = 11625.057607 eV Total energy + Delta-G solvation = -2461.506716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.01010 -39.00785 -35.99515 -35.35613 -32.57292 -31.22226 -29.88522 -27.26952 -26.36133 -23.87592 -23.07587 -21.73141 -19.34129 -18.34164 -17.46227 -16.91217 -16.82029 -16.56119 -16.46440 -15.30544 -15.10437 -14.49745 -14.32082 -14.15595 -14.05289 -13.23401 -13.04979 -12.98408 -12.65167 -12.51577 -12.40538 -11.94115 -11.66171 -11.54693 -11.37666 -10.87663 -10.61492 -9.22428 -8.34986 -8.26086 -6.39960 0.56472 0.68915 1.41593 1.44192 1.55401 2.21081 2.43563 2.82181 2.95950 3.08258 3.99489 4.26028 4.29158 4.30073 4.35159 4.43571 4.54018 4.68247 4.72935 4.75393 4.96236 5.01920 5.29569 5.33799 5.47405 5.52163 5.63430 5.66881 5.76822 6.07700 6.41281 6.62217 6.74821 6.83090 7.30207 8.87206 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.075405 B = 0.004604 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.239628 B = 6079.685876 C = 6425.177612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.749 5.749 3 C 0.246 3.754 4 C -0.238 4.238 5 C -0.033 4.033 6 C -0.282 4.282 7 C 0.151 3.849 8 O -0.342 6.342 9 C 0.086 3.914 10 C 0.028 3.972 11 C -0.547 4.547 12 H 0.071 0.929 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.978 3.022 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.259 1.259 19 C -0.255 4.255 20 H 0.096 0.904 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.406 0.594 24 H 0.147 0.853 25 H 0.151 0.849 26 H 0.123 0.877 27 H 0.059 0.941 28 H 0.060 0.940 29 H -0.002 1.002 30 H -0.002 1.002 31 H 0.267 0.733 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.747 -3.919 0.010 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.379 5.379 3 C 0.141 3.859 4 C -0.261 4.261 5 C -0.051 4.051 6 C -0.303 4.303 7 C 0.104 3.896 8 O -0.257 6.257 9 C 0.011 3.989 10 C -0.009 4.009 11 C -0.585 4.585 12 H 0.089 0.911 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.801 3.199 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.183 1.183 19 C -0.279 4.279 20 H 0.115 0.885 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.241 0.759 24 H 0.165 0.835 25 H 0.169 0.831 26 H 0.140 0.860 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.076 0.924 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.676 -4.139 0.004 21.087 hybrid contribution 1.195 0.299 0.009 1.232 sum -19.481 -3.841 0.013 19.856 Atomic orbital electron populations 1.21729 0.78222 1.04018 1.01464 1.44586 1.06871 1.04568 1.81838 1.17538 0.89372 0.87878 0.91151 1.20789 1.00601 0.90425 1.14240 1.20987 0.92263 0.98927 0.92936 1.21240 0.96453 0.96617 1.15997 1.19165 0.82156 0.94937 0.93313 1.86052 1.17377 1.34225 1.88007 1.22852 0.93408 0.82083 1.00518 1.18975 0.88847 0.97148 0.95951 1.21407 0.92303 0.92573 1.52169 0.91092 1.26058 0.98203 1.01368 0.94099 1.70127 1.06425 1.29899 1.50638 0.85259 0.77612 0.78352 0.78683 1.19499 1.20619 1.18283 1.19821 0.92872 0.96313 1.18871 0.88529 0.92546 0.92553 0.75921 0.83533 0.83132 0.85955 0.92235 0.92228 0.98368 0.98359 0.92430 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 9.94 127.77 1.27 2.30 16 2 N -0.75 -13.93 5.89 -360.88 -2.13 -16.06 16 3 C 0.25 6.41 6.65 38.20 0.25 6.67 16 4 C -0.24 -5.66 9.31 22.41 0.21 -5.45 16 5 C -0.03 -0.84 10.03 22.23 0.22 -0.62 16 6 C -0.28 -9.36 9.04 22.39 0.20 -9.16 16 7 C 0.15 5.73 6.68 22.49 0.15 5.88 16 8 O -0.34 -15.50 10.13 -92.38 -0.94 -16.44 16 9 C 0.09 3.95 4.68 71.98 0.34 4.29 16 10 C 0.03 1.58 5.34 29.85 0.16 1.74 16 11 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 12 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -57.51 13.29 21.44 0.28 -57.23 16 15 Si 0.98 44.03 29.54 68.60 2.03 46.06 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 19 C -0.26 -8.36 9.83 22.49 0.22 -8.14 16 20 H 0.10 0.63 8.14 -2.38 -0.02 0.62 16 21 H 0.06 0.62 7.95 -2.39 -0.02 0.60 16 22 H 0.06 0.62 7.95 -2.39 -0.02 0.60 16 23 H 0.41 6.51 8.84 -92.71 -0.82 5.69 16 24 H 0.15 2.55 6.73 -2.91 -0.02 2.54 16 25 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 26 H 0.12 4.04 6.29 -2.91 -0.02 4.02 16 27 H 0.06 2.59 7.66 -2.39 -0.02 2.58 16 28 H 0.06 2.59 7.66 -2.38 -0.02 2.58 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 31 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 32 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -69.13 275.90 3.26 -65.87 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.29 Total: 11.08 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.72 Total: -33.28 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -1.84 Total: -73.28 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.94 Total: -16.44 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.13 3.26 -65.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062796572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.699 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds