Wall clock time and date at job start Sun Mar 29 2020 21:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46871 * 35.00433 * 11 10 9 13 13 C 1.52994 * 109.47113 * 275.00325 * 11 10 9 14 14 O 1.42902 * 109.47338 * 294.99847 * 13 11 10 15 15 C 1.50696 * 109.46865 * 155.00158 * 11 10 9 16 16 C 1.38236 * 120.00084 * 39.72869 * 15 11 10 17 17 C 1.38238 * 119.99672 * 179.78424 * 16 15 11 18 18 C 1.38233 * 120.00021 * 0.44454 * 17 16 15 19 19 C 1.38229 * 120.00422 * 359.81015 * 18 17 16 20 20 C 1.38236 * 119.99673 * 359.97438 * 19 18 17 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.00899 * 111.00283 * 303.95218 * 10 9 7 25 25 H 1.08998 * 109.47596 * 55.00036 * 13 11 10 26 26 H 1.09007 * 109.47272 * 175.00278 * 13 11 10 27 27 H 0.96703 * 114.00717 * 179.97438 * 14 13 11 28 28 H 1.07997 * 119.99920 * 359.97438 * 16 15 11 29 29 H 1.08000 * 120.00080 * 180.27111 * 17 16 15 30 30 H 1.08008 * 119.99616 * 179.83314 * 18 17 16 31 31 H 1.07997 * 120.00524 * 180.02562 * 19 18 17 32 32 H 1.08005 * 119.99891 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5918 -4.8253 -0.5881 13 6 1.1519 -5.2950 1.4383 14 8 2.3527 -5.5159 2.1810 15 6 2.3974 -5.9627 -0.5993 16 6 3.7494 -5.9704 -0.3113 17 6 4.5671 -6.9414 -0.8586 18 6 4.0344 -7.8991 -1.7011 19 6 2.6833 -7.8883 -1.9932 20 6 1.8649 -6.9200 -1.4424 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8404 -3.5487 -0.7808 25 1 0.5808 -4.4907 1.9019 26 1 0.5555 -6.2074 1.4323 27 1 2.2045 -5.7656 3.1034 28 1 4.1663 -5.2196 0.3436 29 1 5.6226 -6.9501 -0.6302 30 1 4.6738 -8.6562 -2.1308 31 1 2.2670 -8.6368 -2.6511 32 1 0.8092 -6.9118 -1.6703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063002871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:47 Heat of formation + Delta-G solvation = -26.724621 kcal Electronic energy + Delta-G solvation = -14650.383799 eV Core-core repulsion = 12189.590161 eV Total energy + Delta-G solvation = -2460.793638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22656 -36.72423 -34.76385 -32.69028 -30.80696 -30.47932 -27.83365 -25.83480 -23.06275 -22.37538 -21.31060 -19.74597 -17.16708 -16.77117 -16.09024 -15.18514 -14.85124 -14.50381 -14.27253 -13.84808 -13.19821 -13.02788 -12.91455 -12.30406 -12.24028 -11.98093 -11.35698 -11.24247 -10.81071 -10.68644 -10.60828 -10.33877 -9.93667 -9.44269 -9.18409 -8.61828 -8.48181 -8.39213 -7.26817 -6.02885 -4.04189 1.62713 1.72368 3.32822 3.38654 3.43921 4.08578 4.43979 4.73620 5.06552 5.08288 5.22364 5.26006 5.33477 5.45082 5.66896 5.79227 5.89489 6.03580 6.09813 6.16919 6.29353 6.42160 6.70419 6.81618 7.00209 7.24738 7.31487 7.40592 7.79854 8.08400 8.15975 8.41217 8.61274 9.05112 9.60620 11.08375 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037825 B = 0.006417 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.069635 B = 4362.383216 C = 4537.018220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.672 5.672 11 C 0.122 3.878 12 H 0.054 0.946 13 C 0.096 3.904 14 O -0.552 6.552 15 C -0.074 4.074 16 C -0.074 4.074 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.121 4.121 21 H 0.261 0.739 22 H 0.028 0.972 23 H -0.014 1.014 24 H 0.332 0.668 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.365 0.635 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -14.288 -0.577 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.303 5.303 11 C 0.012 3.988 12 H 0.072 0.928 13 C 0.018 3.982 14 O -0.355 6.355 15 C -0.074 4.074 16 C -0.092 4.092 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.149 4.149 20 C -0.140 4.140 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.003 0.997 24 H 0.150 0.850 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.209 0.791 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.032 -13.978 -0.471 14.556 hybrid contribution -0.374 0.746 -0.409 0.929 sum 3.658 -13.233 -0.880 13.757 Atomic orbital electron populations 1.69960 1.06086 1.26765 1.51097 1.24984 0.94879 0.99368 0.95368 0.86476 0.79822 0.82969 0.78021 1.20741 1.21267 1.19742 1.21173 0.93569 0.90145 1.50091 0.91913 1.19636 0.90639 0.87509 0.95585 1.60722 1.20652 0.99951 1.48998 1.20524 0.94913 0.89887 0.93503 0.92798 1.22112 0.86394 0.97579 0.92147 1.86593 1.31252 1.92155 1.25533 1.19989 0.94834 0.96232 0.96364 1.21162 0.92906 0.97684 0.97447 1.21181 0.99665 0.95750 0.98261 1.21054 0.95274 0.99177 0.99268 1.20980 0.93996 0.99040 1.00838 1.21061 0.99587 0.95473 0.97880 0.92946 0.95427 0.99663 0.85047 0.93070 0.94888 0.79071 0.84571 0.86535 0.86831 0.86711 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.08 5.24 -4.97 -0.03 5.06 16 10 N -0.67 -14.77 5.62 -109.22 -0.61 -15.38 16 11 C 0.12 2.26 2.65 -68.87 -0.18 2.08 16 12 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 13 C 0.10 1.62 6.79 37.15 0.25 1.87 16 14 O -0.55 -9.03 12.07 -35.23 -0.43 -9.45 16 15 C -0.07 -1.22 4.59 -104.62 -0.48 -1.70 16 16 C -0.07 -1.20 8.00 -39.58 -0.32 -1.52 16 17 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 18 C -0.13 -1.66 10.05 -39.59 -0.40 -2.05 16 19 C -0.13 -1.70 10.05 -39.59 -0.40 -2.10 16 20 C -0.12 -1.78 9.67 -39.58 -0.38 -2.16 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.03 0.78 7.36 -51.93 -0.38 0.39 16 23 H -0.01 -0.40 8.06 -51.93 -0.42 -0.82 16 24 H 0.33 7.21 7.97 -39.29 -0.31 6.90 16 25 H 0.05 0.93 7.35 -51.93 -0.38 0.54 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.36 4.22 9.12 45.56 0.42 4.64 16 28 H 0.14 2.41 7.48 -52.49 -0.39 2.02 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.52 8.04 -52.48 -0.42 1.09 16 LS Contribution 275.17 15.07 4.15 4.15 Total: -1.00 -31.51 275.17 -7.45 -38.96 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -3.53 Total: 7.31 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.75 Total: -16.23 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.12 Total: -41.62 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.43 Total: -9.45 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.51 -7.45 -38.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063002871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.234 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds