Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48504 * 109.46780 * 239.99983 * 3 2 1 5 5 H 1.48498 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46958 * 119.99795 * 3 2 1 7 7 C 1.37873 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00384 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99801 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.47323 * 325.00430 * 11 10 9 13 13 C 1.52999 * 109.46780 * 85.00017 * 11 10 9 14 14 O 1.42903 * 109.47256 * 65.00343 * 13 11 10 15 15 C 1.50699 * 109.47147 * 204.99931 * 11 10 9 16 16 C 1.38231 * 120.00361 * 319.72945 * 15 11 10 17 17 C 1.38234 * 120.00460 * 179.81084 * 16 15 11 18 18 C 1.38235 * 119.99695 * 0.39509 * 17 16 15 19 19 C 1.38241 * 120.00162 * 359.86039 * 18 17 16 20 20 C 1.38234 * 119.99846 * 359.95275 * 19 18 17 21 21 H 0.97000 * 120.00253 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.47378 * 59.99359 * 9 7 2 23 23 H 1.09000 * 109.46751 * 299.99003 * 9 7 2 24 24 H 1.00903 * 111.00002 * 56.04633 * 10 9 7 25 25 H 1.08997 * 109.47286 * 304.99903 * 13 11 10 26 26 H 1.09008 * 109.47201 * 184.99683 * 13 11 10 27 27 H 0.96700 * 114.00311 * 180.02562 * 14 13 11 28 28 H 1.08008 * 119.99926 * 359.97438 * 16 15 11 29 29 H 1.07995 * 120.00563 * 180.23291 * 17 16 15 30 30 H 1.08004 * 119.99982 * 179.83756 * 18 17 16 31 31 H 1.07992 * 119.99876 * 179.97438 * 19 18 17 32 32 H 1.07994 * 120.00385 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5922 -4.8250 0.5908 13 6 1.1511 -5.2958 -1.4356 14 8 2.3514 -5.5171 -2.1789 15 6 2.3979 -5.9624 0.6016 16 6 3.7477 -5.9771 0.3039 17 6 4.5672 -6.9427 0.8578 18 6 4.0354 -7.8986 1.7029 19 6 2.6846 -7.8872 1.9965 20 6 1.8658 -6.9192 1.4457 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5571 -0.8895 23 1 0.6241 -2.5568 0.8904 24 1 2.8404 -3.5487 0.7819 25 1 0.5797 -4.4917 -1.8993 26 1 0.5547 -6.2082 -1.4288 27 1 2.2026 -5.7673 -3.1010 28 1 4.1625 -5.2324 -0.3594 29 1 5.6224 -6.9519 0.6282 30 1 4.6752 -8.6547 2.1336 31 1 2.2691 -8.6343 2.6564 32 1 0.8106 -6.9100 1.6753 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063002872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = -26.724143 kcal Electronic energy + Delta-G solvation = -14650.374778 eV Core-core repulsion = 12189.581161 eV Total energy + Delta-G solvation = -2460.793617 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.22597 -36.72427 -34.76338 -32.68842 -30.80637 -30.47976 -27.83166 -25.83279 -23.06217 -22.37362 -21.31098 -19.74672 -17.16756 -16.76823 -16.08724 -15.18427 -14.85125 -14.50489 -14.27659 -13.84714 -13.19631 -13.02658 -12.91345 -12.30299 -12.24154 -11.97429 -11.35810 -11.23694 -10.79230 -10.71783 -10.59951 -10.33974 -9.93347 -9.44294 -9.19852 -8.61805 -8.47375 -8.39182 -7.26914 -6.02573 -4.04035 1.62694 1.72449 3.34972 3.38298 3.41986 4.08592 4.44029 4.73668 5.06611 5.08293 5.22439 5.26089 5.33623 5.45186 5.66896 5.79228 5.89612 6.03615 6.09818 6.16978 6.29386 6.42279 6.70446 6.81679 7.00360 7.24794 7.31553 7.40702 7.79652 8.08441 8.16060 8.41346 8.61292 9.04944 9.60719 11.08636 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037831 B = 0.006416 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.957904 B = 4363.342489 C = 4537.521085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.672 5.672 11 C 0.122 3.878 12 H 0.054 0.946 13 C 0.096 3.904 14 O -0.552 6.552 15 C -0.074 4.074 16 C -0.073 4.073 17 C -0.131 4.131 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.121 4.121 21 H 0.262 0.738 22 H 0.027 0.973 23 H -0.014 1.014 24 H 0.332 0.668 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.365 0.635 28 H 0.137 0.863 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -14.281 0.580 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.303 5.303 11 C 0.012 3.988 12 H 0.072 0.928 13 C 0.018 3.982 14 O -0.355 6.355 15 C -0.074 4.074 16 C -0.092 4.092 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.149 4.149 20 C -0.140 4.140 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.004 0.996 24 H 0.149 0.851 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.209 0.791 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.011 -13.969 0.477 14.541 hybrid contribution -0.359 0.741 0.399 0.915 sum 3.652 -13.228 0.876 13.751 Atomic orbital electron populations 1.69951 1.06078 1.26881 1.51010 1.24981 0.94880 0.99352 0.95351 0.86532 0.79410 0.82613 0.78675 1.20147 1.21365 1.20266 1.21136 0.93532 0.90161 1.50233 0.91969 1.19629 0.90635 0.87494 0.95584 1.60739 1.20628 0.99948 1.48981 1.20524 0.94912 0.89903 0.93496 0.92799 1.22115 0.86402 0.97577 0.92147 1.86593 1.31263 1.92133 1.25547 1.19991 0.94859 0.96220 0.96371 1.21162 0.92908 0.97676 0.97420 1.21181 0.99649 0.95819 0.98227 1.21058 0.95276 0.99157 0.99277 1.20981 0.93997 0.99061 1.00824 1.21060 0.99577 0.95437 0.97914 0.92886 0.95445 0.99648 0.85059 0.93068 0.94887 0.79071 0.84563 0.86536 0.86832 0.86712 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.09 5.24 -4.97 -0.03 5.06 16 10 N -0.67 -14.77 5.64 -109.23 -0.62 -15.38 16 11 C 0.12 2.26 2.65 -68.86 -0.18 2.07 16 12 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 13 C 0.10 1.62 6.79 37.16 0.25 1.87 16 14 O -0.55 -9.02 12.02 -35.23 -0.42 -9.44 16 15 C -0.07 -1.23 4.59 -104.62 -0.48 -1.71 16 16 C -0.07 -1.20 8.00 -39.59 -0.32 -1.51 16 17 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 18 C -0.13 -1.66 10.05 -39.58 -0.40 -2.05 16 19 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 20 C -0.12 -1.78 9.67 -39.58 -0.38 -2.16 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.03 0.77 7.36 -51.93 -0.38 0.39 16 23 H -0.01 -0.40 8.05 -51.93 -0.42 -0.81 16 24 H 0.33 7.22 7.99 -39.29 -0.31 6.90 16 25 H 0.05 0.93 7.35 -51.93 -0.38 0.55 16 26 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.36 4.22 9.12 45.56 0.42 4.64 16 28 H 0.14 2.41 7.46 -52.48 -0.39 2.02 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.52 8.04 -52.49 -0.42 1.09 16 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -31.47 275.13 -7.45 -38.92 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.53 Total: 7.35 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.75 Total: -16.25 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.12 Total: -41.63 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.42 Total: -9.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.47 -7.45 -38.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063002872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.201 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds