Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48504 * 109.46780 * 239.99983 * 3 2 1 5 5 H 1.48498 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46958 * 119.99795 * 3 2 1 7 7 C 1.37873 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00384 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99801 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.47323 * 325.00430 * 11 10 9 13 13 C 1.52999 * 109.46780 * 85.00017 * 11 10 9 14 14 O 1.42903 * 109.47256 * 65.00343 * 13 11 10 15 15 C 1.50699 * 109.47147 * 204.99931 * 11 10 9 16 16 C 1.38231 * 120.00361 * 319.72945 * 15 11 10 17 17 C 1.38234 * 120.00460 * 179.81084 * 16 15 11 18 18 C 1.38235 * 119.99695 * 0.39509 * 17 16 15 19 19 C 1.38241 * 120.00162 * 359.86039 * 18 17 16 20 20 C 1.38234 * 119.99846 * 359.95275 * 19 18 17 21 21 H 0.97000 * 120.00253 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.47378 * 59.99359 * 9 7 2 23 23 H 1.09000 * 109.46751 * 299.99003 * 9 7 2 24 24 H 1.00903 * 111.00002 * 56.04633 * 10 9 7 25 25 H 1.08997 * 109.47286 * 304.99903 * 13 11 10 26 26 H 1.09008 * 109.47201 * 184.99683 * 13 11 10 27 27 H 0.96700 * 114.00311 * 180.02562 * 14 13 11 28 28 H 1.08008 * 119.99926 * 359.97438 * 16 15 11 29 29 H 1.07995 * 120.00563 * 180.23291 * 17 16 15 30 30 H 1.08004 * 119.99982 * 179.83756 * 18 17 16 31 31 H 1.07992 * 119.99876 * 179.97438 * 19 18 17 32 32 H 1.07994 * 120.00385 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5922 -4.8250 0.5908 13 6 1.1511 -5.2958 -1.4356 14 8 2.3514 -5.5171 -2.1789 15 6 2.3979 -5.9624 0.6016 16 6 3.7477 -5.9771 0.3039 17 6 4.5672 -6.9427 0.8578 18 6 4.0354 -7.8986 1.7029 19 6 2.6846 -7.8872 1.9965 20 6 1.8658 -6.9192 1.4457 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5571 -0.8895 23 1 0.6241 -2.5568 0.8904 24 1 2.8404 -3.5487 0.7819 25 1 0.5797 -4.4917 -1.8993 26 1 0.5547 -6.2082 -1.4288 27 1 2.2026 -5.7673 -3.1010 28 1 4.1625 -5.2324 -0.3594 29 1 5.6224 -6.9519 0.6282 30 1 4.6752 -8.6547 2.1336 31 1 2.2691 -8.6343 2.6564 32 1 0.8106 -6.9100 1.6753 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063002872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = -49.675711 kcal Electronic energy + Delta-G solvation = -14651.370032 eV Core-core repulsion = 12189.581161 eV Total energy + Delta-G solvation = -2461.788872 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43608 -38.07476 -36.40690 -34.67855 -32.27631 -31.65226 -29.34115 -27.73150 -24.65150 -23.63067 -22.88127 -21.14349 -18.80741 -18.28879 -17.58927 -16.71019 -16.54095 -15.91755 -15.51937 -15.41460 -14.72717 -14.49392 -14.20468 -13.84688 -13.82750 -13.52026 -13.09454 -12.74901 -12.60060 -12.44772 -12.09470 -11.80078 -11.55301 -11.32255 -10.79132 -10.65962 -9.71501 -9.54968 -9.11331 -8.23584 -6.34489 0.51487 0.62111 1.40181 1.43942 1.51971 2.39372 2.96787 3.09621 3.41051 3.56648 3.83382 4.13752 4.25561 4.33469 4.39476 4.57956 4.63730 4.70315 4.80015 4.85658 5.05937 5.16662 5.23813 5.29970 5.59106 5.63588 5.71586 5.84638 6.03056 6.21459 6.45434 6.67764 6.85908 7.04507 7.36180 8.87841 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037831 B = 0.006416 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.957904 B = 4363.342489 C = 4537.521085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.669 5.669 11 C 0.117 3.883 12 H 0.046 0.954 13 C 0.102 3.898 14 O -0.566 6.566 15 C -0.092 4.092 16 C -0.091 4.091 17 C -0.134 4.134 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.130 4.130 21 H 0.266 0.734 22 H 0.003 0.997 23 H -0.040 1.040 24 H 0.331 0.669 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.385 0.615 28 H 0.113 0.887 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -15.468 1.226 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.083 3.917 10 N -0.300 5.300 11 C 0.007 3.993 12 H 0.064 0.936 13 C 0.023 3.977 14 O -0.372 6.372 15 C -0.092 4.092 16 C -0.110 4.110 17 C -0.151 4.151 18 C -0.142 4.142 19 C -0.145 4.145 20 C -0.149 4.149 21 H 0.074 0.926 22 H 0.021 0.979 23 H -0.023 1.023 24 H 0.149 0.851 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.233 0.767 28 H 0.131 0.869 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.253 -15.184 1.106 16.105 hybrid contribution -0.737 0.992 0.201 1.252 sum 4.516 -14.192 1.307 14.950 Atomic orbital electron populations 1.70076 1.07730 1.28091 1.51443 1.25932 0.95811 1.03298 0.94505 0.85383 0.78132 0.77652 0.79112 1.19405 1.20563 1.19187 1.21489 0.93711 0.91497 1.50770 0.92059 1.19254 0.90565 0.88806 0.93095 1.60636 1.19885 1.00506 1.48947 1.20608 0.94823 0.88856 0.94974 0.93604 1.21995 0.86573 0.98077 0.91054 1.86545 1.31165 1.92230 1.27233 1.19829 0.94760 0.96664 0.97982 1.21043 0.93184 0.98453 0.98286 1.21433 1.00465 0.95271 0.97973 1.21473 0.95671 0.98999 0.98030 1.21369 0.94038 0.98768 1.00298 1.21252 1.00577 0.95467 0.97595 0.92562 0.97895 1.02275 0.85126 0.95299 0.91921 0.76715 0.86868 0.84538 0.83467 0.83603 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -31.52 9.32 25.60 0.24 -31.29 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.62 5.24 85.56 0.45 12.07 16 10 N -0.67 -30.59 5.64 -499.48 -2.82 -33.41 16 11 C 0.12 4.46 2.65 44.17 0.12 4.58 16 12 H 0.05 1.80 7.66 -2.39 -0.02 1.78 16 13 C 0.10 3.46 6.79 71.98 0.49 3.95 16 14 O -0.57 -18.48 12.02 -148.98 -1.79 -20.27 16 15 C -0.09 -3.03 4.59 -19.87 -0.09 -3.12 16 16 C -0.09 -2.94 8.00 22.27 0.18 -2.76 16 17 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 18 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 19 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 20 C -0.13 -3.61 9.67 22.27 0.22 -3.40 16 21 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 22 H 0.00 0.18 7.36 -2.39 -0.02 0.16 16 23 H -0.04 -2.38 8.05 -2.39 -0.02 -2.40 16 24 H 0.33 14.99 7.99 -89.69 -0.72 14.27 16 25 H 0.03 1.09 7.35 -2.39 -0.02 1.08 16 26 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.38 8.70 9.12 -74.06 -0.68 8.02 16 28 H 0.11 4.11 7.46 -2.91 -0.02 4.09 16 29 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.13 3.13 8.04 -2.91 -0.02 3.10 16 Total: -1.00 -68.39 275.13 0.16 -68.23 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.27 Total: 22.81 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 2.73 Total: -27.72 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -2.53 Total: -90.16 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.79 Total: -20.27 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.39 0.16 -68.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063002872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.553 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds