Wall clock time and date at job start Sun Mar 29 2020 22:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46767 * 89.99886 * 9 7 5 11 11 H 1.48493 * 109.47240 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99973 * 9 7 5 13 13 C 1.38403 * 119.99857 * 269.72364 * 3 2 1 14 14 N 1.32496 * 119.21247 * 179.73444 * 13 3 2 15 15 C 1.32285 * 120.73827 * 179.71622 * 14 13 3 16 16 C 1.38604 * 119.19201 * 0.54880 * 15 14 13 17 17 C 1.50702 * 120.71675 * 179.75257 * 16 15 14 18 18 C 1.38599 * 118.56353 * 359.72498 * 16 15 14 19 19 N 1.32279 * 119.19431 * 0.02562 * 18 16 15 20 20 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 22 22 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 23 23 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 24 24 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 25 25 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 26 26 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 27 27 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.40235 * 180.24517 * 15 14 13 29 29 H 1.09002 * 109.46969 * 269.97391 * 17 16 15 30 30 H 1.09000 * 109.47591 * 29.97088 * 17 16 15 31 31 H 1.08996 * 109.47264 * 149.97212 * 17 16 15 32 32 H 1.08000 * 120.40133 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.7852 3.1608 2.8610 11 1 5.9877 2.1193 4.9005 12 1 6.3689 0.7726 2.9203 13 6 2.2544 2.0318 -1.1986 14 7 2.6909 3.2827 -1.1805 15 6 2.9317 3.9312 -2.3080 16 6 2.7111 3.2901 -3.5169 17 6 2.9687 3.9983 -4.8220 18 6 2.2491 1.9835 -3.4996 19 7 2.0331 1.3909 -2.3368 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5140 -0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 2.0955 3.1410 1.1384 26 1 1.5817 1.6877 2.0284 27 1 3.6750 3.5155 4.4444 28 1 3.2911 4.9493 -2.2869 29 1 2.0619 4.5116 -5.1420 30 1 3.7700 4.7252 -4.6891 31 1 3.2605 3.2703 -5.5790 32 1 2.0667 1.4559 -4.4241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063048390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:28 Heat of formation + Delta-G solvation = 50.905741 kcal Electronic energy + Delta-G solvation = -14867.714719 eV Core-core repulsion = 12442.580138 eV Total energy + Delta-G solvation = -2425.134581 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28726 -36.50377 -33.12534 -32.87010 -32.43565 -30.07296 -27.53761 -25.62652 -24.16977 -22.65227 -22.51520 -20.26442 -17.00936 -16.96557 -16.28105 -14.74080 -14.56372 -14.36303 -13.91110 -13.77930 -13.19254 -12.86600 -12.80857 -12.41393 -12.16412 -11.95499 -11.61950 -11.17875 -10.89631 -10.59239 -10.44432 -10.24600 -10.17911 -10.05268 -9.81570 -9.04912 -8.44951 -8.26992 -6.92938 -6.00944 -4.07120 1.81878 1.83478 3.31147 3.36887 3.39954 3.65916 4.43759 4.57802 4.83825 5.12033 5.30256 5.30950 5.38727 5.40619 5.66613 5.77324 5.84910 5.92441 6.01064 6.07735 6.29498 6.38795 6.43482 6.67633 6.86393 7.13309 7.45254 7.63970 7.84387 7.96824 8.25662 8.40648 8.91973 9.12893 9.57276 11.04803 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025948 B = 0.008911 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.835708 B = 3141.355533 C = 3836.527950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 N -0.561 5.561 4 C 0.256 3.744 5 C -0.522 4.522 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.567 3.433 14 N -0.544 5.544 15 C 0.192 3.808 16 C -0.294 4.294 17 C -0.083 4.083 18 C 0.187 3.813 19 N -0.583 5.583 20 H 0.057 0.943 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.155 0.845 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 -1.364 -12.338 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.004 3.996 3 N -0.272 5.272 4 C 0.137 3.863 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.212 3.788 14 N -0.265 5.265 15 C 0.021 3.979 16 C -0.303 4.303 17 C -0.141 4.141 18 C 0.018 3.982 19 N -0.306 5.306 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.172 0.828 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.224 -1.886 -10.969 11.588 hybrid contribution 1.210 0.377 -0.415 1.334 sum -2.014 -1.509 -11.384 11.659 Atomic orbital electron populations 1.22131 0.97017 1.01076 1.01839 1.21266 0.93255 0.82573 1.02532 1.46939 1.64365 1.12737 1.03175 1.19355 0.96148 0.93705 0.77132 1.21439 0.96874 1.31640 1.06161 0.92694 1.24899 0.97707 0.95001 0.96331 1.69931 1.35533 1.33604 1.14361 0.86528 0.84905 0.78590 0.77571 1.20622 1.21129 1.20025 1.19422 0.87363 0.85658 0.86334 1.68140 1.18762 1.08909 1.30655 1.22803 0.89900 0.98601 0.86560 1.21076 1.13346 0.98450 0.97447 1.20341 1.01058 0.99421 0.93306 1.22591 0.89604 0.90911 0.95123 1.67917 1.25765 1.38907 0.97999 0.92387 0.92702 0.92992 0.90746 0.90479 0.93242 0.94956 0.92760 0.82787 0.92336 0.92141 0.92317 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.43 6.14 -4.04 -0.02 2.41 16 3 N -0.56 -12.86 2.56 -177.41 -0.45 -13.31 16 4 C 0.26 6.77 5.16 -5.19 -0.03 6.74 16 5 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.05 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.57 12.64 8.17 -322.82 -2.64 10.00 16 14 N -0.54 -12.20 9.11 -13.93 -0.13 -12.33 16 15 C 0.19 3.39 11.00 -17.22 -0.19 3.20 16 16 C -0.29 -4.39 5.91 -104.35 -0.62 -5.01 16 17 C -0.08 -0.87 10.06 36.01 0.36 -0.51 16 18 C 0.19 2.95 11.00 -17.23 -0.19 2.76 16 19 N -0.58 -11.33 9.11 -13.93 -0.13 -11.46 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 23 H 0.07 1.36 7.32 -51.93 -0.38 0.98 16 24 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 25 H 0.05 1.43 7.33 -51.93 -0.38 1.05 16 26 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 28 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 279.26 15.07 4.21 4.21 Total: -1.00 -31.75 279.26 -8.67 -40.42 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.52 Total: -2.55 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -3.36 Total: 3.80 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.03 Total: -62.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.75 -8.67 -40.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063048390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.329 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds