Wall clock time and date at job start Sun Mar 29 2020 22:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46767 * 89.99886 * 9 7 5 11 11 H 1.48493 * 109.47240 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99973 * 9 7 5 13 13 C 1.38403 * 119.99857 * 269.72364 * 3 2 1 14 14 N 1.32496 * 119.21247 * 179.73444 * 13 3 2 15 15 C 1.32285 * 120.73827 * 179.71622 * 14 13 3 16 16 C 1.38604 * 119.19201 * 0.54880 * 15 14 13 17 17 C 1.50702 * 120.71675 * 179.75257 * 16 15 14 18 18 C 1.38599 * 118.56353 * 359.72498 * 16 15 14 19 19 N 1.32279 * 119.19431 * 0.02562 * 18 16 15 20 20 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 22 22 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 23 23 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 24 24 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 25 25 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 26 26 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 27 27 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.40235 * 180.24517 * 15 14 13 29 29 H 1.09002 * 109.46969 * 269.97391 * 17 16 15 30 30 H 1.09000 * 109.47591 * 29.97088 * 17 16 15 31 31 H 1.08996 * 109.47264 * 149.97212 * 17 16 15 32 32 H 1.08000 * 120.40133 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.7852 3.1608 2.8610 11 1 5.9877 2.1193 4.9005 12 1 6.3689 0.7726 2.9203 13 6 2.2544 2.0318 -1.1986 14 7 2.6909 3.2827 -1.1805 15 6 2.9317 3.9312 -2.3080 16 6 2.7111 3.2901 -3.5169 17 6 2.9687 3.9983 -4.8220 18 6 2.2491 1.9835 -3.4996 19 7 2.0331 1.3909 -2.3368 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5140 -0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 2.0955 3.1410 1.1384 26 1 1.5817 1.6877 2.0284 27 1 3.6750 3.5155 4.4444 28 1 3.2911 4.9493 -2.2869 29 1 2.0619 4.5116 -5.1420 30 1 3.7700 4.7252 -4.6891 31 1 3.2605 3.2703 -5.5790 32 1 2.0667 1.4559 -4.4241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063048390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:27 Heat of formation + Delta-G solvation = 33.209506 kcal Electronic energy + Delta-G solvation = -14868.482085 eV Core-core repulsion = 12442.580138 eV Total energy + Delta-G solvation = -2425.901948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.73071 -38.10956 -34.97485 -34.42378 -33.87803 -31.65817 -29.26853 -27.07634 -25.70295 -24.44326 -23.88901 -21.79852 -18.76883 -18.47008 -18.25345 -16.60444 -16.16911 -15.75344 -15.44362 -15.06871 -14.66546 -14.38030 -14.17199 -13.86516 -13.51055 -13.26394 -13.06499 -12.98809 -12.70682 -12.52324 -12.19879 -11.83202 -11.79163 -11.64155 -11.57740 -10.63968 -10.61633 -9.75994 -8.58988 -8.11189 -6.33854 0.41563 0.48351 1.36058 1.37573 1.48043 2.07732 2.39620 3.08848 3.12947 3.51258 3.80902 3.97997 4.20538 4.27251 4.34767 4.43217 4.58804 4.80827 4.92108 4.97529 5.00652 5.07585 5.18678 5.27006 5.32080 5.34426 5.63282 5.74010 6.05870 6.14685 6.25655 6.70540 6.84255 7.33440 7.61682 8.86616 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025948 B = 0.008911 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.835708 B = 3141.355533 C = 3836.527950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.127 3.873 3 N -0.581 5.581 4 C 0.280 3.720 5 C -0.535 4.535 6 H 0.042 0.958 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.963 3.037 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.270 1.270 13 C 0.543 3.457 14 N -0.595 5.595 15 C 0.168 3.832 16 C -0.268 4.268 17 C -0.080 4.080 18 C 0.177 3.823 19 N -0.588 5.588 20 H 0.091 0.909 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.267 0.733 28 H 0.178 0.822 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -1.690 -14.576 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.004 3.996 3 N -0.294 5.294 4 C 0.158 3.842 5 C -0.574 4.574 6 H 0.060 0.940 7 C -0.186 4.186 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.195 1.195 13 C 0.188 3.812 14 N -0.318 5.318 15 C 0.001 3.999 16 C -0.276 4.276 17 C -0.138 4.138 18 C 0.009 3.991 19 N -0.311 5.311 20 H 0.110 0.890 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.195 0.805 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.532 -2.195 -13.283 13.699 hybrid contribution 0.979 0.551 0.082 1.126 sum -1.553 -1.644 -13.201 13.393 Atomic orbital electron populations 1.22013 0.94985 1.02902 1.00781 1.21388 0.94884 0.80922 1.02365 1.46754 1.66379 1.13864 1.02448 1.18722 0.94798 0.91989 0.78669 1.21619 0.97760 1.31645 1.06376 0.93964 1.25744 1.02016 0.94556 0.96259 1.70040 1.37494 1.34260 1.14785 0.85483 0.79536 0.78547 0.77617 1.20274 1.19857 1.19464 1.19528 0.88787 0.86064 0.86858 1.68060 1.20455 1.09766 1.33478 1.23368 0.90207 0.99712 0.86642 1.21583 1.09619 0.97985 0.98463 1.20458 1.02392 0.99987 0.90965 1.23457 0.88589 0.91661 0.95361 1.67941 1.25837 1.39151 0.98217 0.89000 0.94074 0.93587 0.90026 0.91322 0.96627 0.96695 0.92393 0.80535 0.90534 0.90985 0.89989 0.78482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 10.24 71.98 0.74 -4.08 16 2 C 0.13 4.94 6.14 86.38 0.53 5.47 16 3 N -0.58 -27.65 2.56 -715.19 -1.83 -29.48 16 4 C 0.28 15.59 5.16 85.63 0.44 16.04 16 5 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 6 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 7 C 0.01 0.77 5.46 84.65 0.46 1.23 16 8 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.54 24.67 8.17 261.49 2.14 26.80 16 14 N -0.60 -27.40 9.11 -197.99 -1.80 -29.20 16 15 C 0.17 5.82 11.00 84.71 0.93 6.75 16 16 C -0.27 -7.27 5.91 -19.69 -0.12 -7.39 16 17 C -0.08 -1.31 10.06 71.24 0.72 -0.60 16 18 C 0.18 5.09 11.00 84.71 0.93 6.03 16 19 N -0.59 -22.37 9.11 -197.99 -1.80 -24.17 16 20 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.08 2.99 7.32 -2.39 -0.02 2.97 16 24 H 0.07 2.70 8.07 -2.39 -0.02 2.68 16 25 H 0.02 0.96 7.33 -2.39 -0.02 0.95 16 26 H 0.02 0.87 8.07 -2.38 -0.02 0.85 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 28 H 0.18 4.95 8.06 -2.91 -0.02 4.93 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.08 1.03 8.10 -2.39 -0.02 1.02 16 32 H 0.20 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -71.38 279.26 4.98 -66.40 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.09 Total: 5.81 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 7.01 Total: 18.89 kcal Atomic # 7 Polarization: -133.54 SS G_CDS: -5.15 Total: -138.69 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.38 4.98 -66.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063048390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.613 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds