Wall clock time and date at job start Sun Mar 29 2020 22:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38813 * 119.98921 * 2 1 4 4 C 1.38565 * 118.03284 * 179.77419 * 3 2 1 5 5 C 1.39481 * 117.90641 * 0.47726 * 4 3 2 6 6 N 1.39050 * 120.15890 * 179.78628 * 5 4 3 7 7 C 1.46499 * 119.99946 * 190.99159 * 6 5 4 8 8 C 1.46499 * 119.99991 * 10.98994 * 6 5 4 9 9 H 1.09006 * 109.47219 * 1.91081 * 8 6 5 10 10 C 1.52993 * 109.47138 * 121.91227 * 8 6 5 11 11 C 1.50702 * 109.47290 * 241.91770 * 8 6 5 12 12 H 1.08002 * 119.99768 * 359.97438 * 11 8 6 13 13 C 1.37875 * 120.00152 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99609 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 120.00161 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.46728 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46950 * 119.99999 * 15 13 11 18 18 H 1.48492 * 109.47140 * 239.99956 * 15 13 11 19 19 N 1.32483 * 119.68489 * 359.50913 * 5 4 3 20 20 N 1.28348 * 122.07179 * 0.25633 * 19 5 4 21 21 H 1.09001 * 109.47098 * 269.97724 * 1 2 3 22 22 H 1.08995 * 109.47607 * 29.98065 * 1 2 3 23 23 H 1.09000 * 109.47318 * 149.98491 * 1 2 3 24 24 H 1.07994 * 120.98699 * 359.97438 * 3 2 1 25 25 H 1.08005 * 121.04842 * 180.26664 * 4 3 2 26 26 H 1.09000 * 109.47172 * 89.99768 * 7 6 5 27 27 H 1.09002 * 109.47091 * 209.99839 * 7 6 5 28 28 H 1.08996 * 109.47106 * 329.99742 * 7 6 5 29 29 H 1.08998 * 109.47337 * 60.00152 * 10 8 6 30 30 H 1.09005 * 109.47270 * 180.02562 * 10 8 6 31 31 H 1.08999 * 109.47560 * 299.99993 * 10 8 6 32 32 H 0.97008 * 119.99245 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5857 1.1550 0.0048 5 6 4.1961 -0.0992 -0.0009 6 7 5.5828 -0.2012 -0.0009 7 6 6.2220 -1.4959 -0.2487 8 6 6.4046 0.9860 0.2469 9 1 5.7578 1.8414 0.4422 10 6 7.3043 0.7395 1.4595 11 6 7.2580 1.2677 -0.9629 12 1 7.1948 0.6262 -1.8295 13 6 8.1202 2.3436 -0.9630 14 7 8.1974 3.1244 0.0925 15 14 9.1785 2.6923 -2.4623 16 1 8.9055 1.6743 -3.5084 17 1 8.8585 4.0427 -2.9908 18 1 10.6122 2.6375 -2.0797 19 7 3.4483 -1.1928 -0.0007 20 7 2.1658 -1.1415 -0.0003 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5141 24 1 1.6769 2.1466 -0.0004 25 1 4.1740 2.0607 0.0094 26 1 6.3953 -1.6168 -1.3180 27 1 7.1739 -1.5383 0.2807 28 1 5.5726 -2.2957 0.1069 29 1 7.9512 -0.1158 1.2642 30 1 7.9155 1.6230 1.6441 31 1 6.6871 0.5358 2.3345 32 1 8.8037 3.8816 0.0922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:45 Heat of formation + Delta-G solvation = 45.327971 kcal Electronic energy + Delta-G solvation = -14943.952505 eV Core-core repulsion = 12518.576054 eV Total energy + Delta-G solvation = -2425.376452 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.79224 -38.54587 -35.24705 -34.31186 -33.13501 -31.20474 -28.66123 -27.54456 -27.18451 -24.33730 -23.93488 -21.59673 -18.58828 -18.32792 -18.17415 -16.77986 -16.21652 -16.08478 -15.48389 -15.03680 -14.75468 -14.30184 -13.97746 -13.63386 -13.44482 -13.13575 -13.00562 -12.89272 -12.69660 -12.52362 -12.23135 -12.14741 -11.91175 -11.49876 -11.02002 -10.82028 -10.57897 -10.32468 -8.54685 -8.13670 -6.33906 0.04191 0.39098 1.38894 1.42713 1.52502 2.13421 2.42380 2.80141 3.09115 3.52181 3.80930 3.88356 3.95745 4.30461 4.44332 4.66304 4.70513 4.76274 4.87285 4.89318 4.91837 5.00122 5.02184 5.13913 5.28041 5.33630 5.54085 5.60715 5.81598 6.08600 6.31274 6.62845 6.77847 7.36994 8.05296 8.84549 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039266 B = 0.007488 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.905290 B = 3738.213562 C = 3939.221441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.008 4.008 3 C -0.068 4.068 4 C -0.193 4.193 5 C 0.327 3.673 6 N -0.589 5.589 7 C 0.108 3.892 8 C 0.272 3.728 9 H 0.036 0.964 10 C -0.139 4.139 11 C -0.540 4.540 12 H 0.049 0.951 13 C 0.027 3.973 14 N -0.910 5.910 15 Si 0.957 3.043 16 H -0.275 1.275 17 H -0.278 1.278 18 H -0.277 1.277 19 N -0.349 5.349 20 N -0.241 5.241 21 H 0.087 0.913 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.184 0.816 25 H 0.144 0.856 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 -1.447 0.328 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.160 4.160 3 C -0.096 4.096 4 C -0.226 4.226 5 C 0.085 3.915 6 N -0.300 5.300 7 C -0.035 4.035 8 C 0.170 3.830 9 H 0.054 0.946 10 C -0.197 4.197 11 C -0.579 4.579 12 H 0.068 0.932 13 C -0.174 4.174 14 N -0.549 5.549 15 Si 0.783 3.217 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.202 1.202 19 N -0.201 5.201 20 N -0.082 5.082 21 H 0.106 0.894 22 H 0.117 0.883 23 H 0.092 0.908 24 H 0.201 0.799 25 H 0.162 0.838 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.397 -2.968 0.397 9.863 hybrid contribution 1.131 1.800 -0.681 2.232 sum -8.266 -1.168 -0.284 8.353 Atomic orbital electron populations 1.20582 0.84856 1.04470 1.03996 1.23140 1.00503 0.89885 1.02465 1.22450 0.92539 1.01004 0.93634 1.22211 0.96758 0.97875 1.05738 1.20392 0.87500 0.92035 0.91528 1.46975 1.00191 1.10888 1.71952 1.21412 0.97999 0.84192 0.99911 1.18802 0.88610 0.81702 0.93884 0.94606 1.21970 0.99731 1.01914 0.96127 1.21561 1.23232 1.12350 1.00730 0.93238 1.25538 0.97647 0.95446 0.98740 1.69960 1.38348 1.16944 1.29650 0.85519 0.78667 0.77904 0.79607 1.20010 1.20417 1.20236 1.72817 0.99855 1.25317 1.22097 1.72465 1.00498 1.26832 1.08368 0.89430 0.88267 0.90788 0.79868 0.83831 0.94441 0.91091 0.90968 0.94240 0.90487 0.95818 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.19 71.24 0.73 -0.80 16 2 C -0.01 -0.23 6.87 42.70 0.29 0.06 16 3 C -0.07 -1.98 9.86 22.49 0.22 -1.76 16 4 C -0.19 -7.25 9.35 22.65 0.21 -7.04 16 5 C 0.33 13.98 7.41 133.11 0.99 14.96 16 6 N -0.59 -26.16 2.87 -708.41 -2.03 -28.20 16 7 C 0.11 4.29 9.89 127.77 1.26 5.55 16 8 C 0.27 13.11 2.54 44.24 0.11 13.22 16 9 H 0.04 1.83 5.48 -2.38 -0.01 1.82 16 10 C -0.14 -6.42 8.91 71.98 0.64 -5.77 16 11 C -0.54 -28.22 8.40 25.60 0.21 -28.00 16 12 H 0.05 2.66 7.71 -2.91 -0.02 2.64 16 13 C 0.03 1.39 5.30 84.65 0.45 1.84 16 14 N -0.91 -48.42 11.32 21.45 0.24 -48.17 16 15 Si 0.96 41.62 29.54 68.60 2.03 43.65 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 19 N -0.35 -14.78 10.27 -55.10 -0.57 -15.35 16 20 N -0.24 -9.14 11.41 -47.57 -0.54 -9.68 16 21 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 22 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 25 H 0.14 5.60 6.03 -2.91 -0.02 5.58 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 2.70 6.33 -2.39 -0.02 2.68 16 28 H 0.07 2.72 7.26 -2.39 -0.02 2.70 16 29 H 0.04 1.74 6.60 -2.39 -0.02 1.72 16 30 H 0.08 3.87 6.07 -2.38 -0.01 3.85 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.27 13.47 8.31 -92.70 -0.77 12.70 16 Total: -1.00 -60.60 267.95 5.36 -55.23 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.11 Total: 10.26 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.12 Total: -7.74 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -2.90 Total: -101.40 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -60.60 5.36 -55.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.563 kcal (2) G-P(sol) polarization free energy of solvation -60.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds