Wall clock time and date at job start Sun Mar 29 2020 22:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38603 * 120.72058 * 2 1 4 4 N 1.32273 * 119.19942 * 179.70366 * 3 2 1 5 5 C 1.32501 * 120.73580 * 0.27661 * 4 3 2 6 6 N 1.38408 * 119.21374 * 179.97438 * 5 4 3 7 7 C 1.46502 * 120.00426 * 359.97438 * 6 5 4 8 8 C 1.46503 * 119.99812 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.46666 * 359.97438 * 8 6 5 10 10 C 1.52999 * 109.46782 * 239.99650 * 8 6 5 11 11 C 1.50704 * 109.47169 * 119.99627 * 8 6 5 12 12 H 1.07997 * 119.99749 * 35.00441 * 11 8 6 13 13 C 1.37875 * 119.99837 * 215.00556 * 11 8 6 14 14 N 1.31515 * 119.99746 * 184.91933 * 13 11 8 15 15 Si 1.86805 * 120.00087 * 4.91010 * 13 11 8 16 16 H 1.48506 * 109.46591 * 84.84089 * 15 13 11 17 17 H 1.48494 * 109.46924 * 204.83613 * 15 13 11 18 18 H 1.48499 * 109.47343 * 324.84149 * 15 13 11 19 19 N 1.32489 * 121.56829 * 359.97438 * 5 4 3 20 20 C 1.32278 * 120.73911 * 0.02562 * 19 5 4 21 21 H 1.08994 * 109.47083 * 89.99523 * 1 2 3 22 22 H 1.08996 * 109.46877 * 210.00406 * 1 2 3 23 23 H 1.09005 * 109.46710 * 329.99934 * 1 2 3 24 24 H 1.08008 * 120.40469 * 359.97438 * 3 2 1 25 25 H 1.08997 * 109.46776 * 89.99817 * 7 6 5 26 26 H 1.08993 * 109.47124 * 210.00683 * 7 6 5 27 27 H 1.09003 * 109.46667 * 330.00055 * 7 6 5 28 28 H 1.09006 * 109.46625 * 174.97794 * 10 8 6 29 29 H 1.09003 * 109.47250 * 294.97582 * 10 8 6 30 30 H 1.08997 * 109.46967 * 54.97778 * 10 8 6 31 31 H 0.97004 * 119.99657 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.40169 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1915 0.0000 4 7 3.5373 1.1564 0.0060 5 6 4.1841 0.0000 0.0064 6 7 5.5681 0.0000 0.0122 7 6 6.3007 1.2687 0.0172 8 6 6.3006 -1.2688 0.0122 9 1 5.5923 -2.0972 0.0077 10 6 7.1751 -1.3527 1.2649 11 6 7.1721 -1.3457 -1.2149 12 1 7.6360 -0.4517 -1.6046 13 6 7.3772 -2.5574 -1.8399 14 7 8.2134 -2.6423 -2.8515 15 14 6.4675 -4.0785 -1.2498 16 1 5.1280 -4.1331 -1.8888 17 1 7.2410 -5.2916 -1.6175 18 1 6.3101 -4.0200 0.2256 19 7 3.5374 -1.1564 0.0014 20 6 2.2151 -1.1915 -0.0047 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6935 2.1373 -0.0004 25 1 6.4780 1.5817 1.0461 26 1 7.2551 1.1391 -0.4929 27 1 5.7137 2.0291 -0.4980 28 1 7.6511 -2.3323 1.3106 29 1 7.9409 -0.5780 1.2260 30 1 6.5562 -1.2078 2.1503 31 1 8.3579 -3.4949 -3.2910 32 1 1.6935 -2.1372 -0.0091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095875.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:00 Heat of formation + Delta-G solvation = 57.075570 kcal Electronic energy + Delta-G solvation = -15065.294708 eV Core-core repulsion = 12640.427670 eV Total energy + Delta-G solvation = -2424.867038 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40472 -36.72167 -33.37045 -33.05519 -32.16204 -30.05193 -27.30468 -25.40039 -24.95264 -23.83197 -21.86490 -19.79110 -17.40132 -17.00100 -16.60870 -14.92215 -14.54483 -14.28489 -13.93261 -13.54648 -13.29851 -13.01399 -12.54234 -12.42131 -12.28867 -12.23188 -11.64221 -11.23288 -11.01831 -10.72164 -10.51854 -10.34240 -10.29079 -9.79554 -9.50374 -9.05450 -8.62950 -8.42122 -6.93867 -6.17355 -4.19422 1.70678 1.71593 3.29094 3.36694 3.42361 3.55069 4.37050 4.44199 4.73900 4.99496 5.15898 5.22023 5.31137 5.37908 5.71497 5.91292 5.95099 6.09893 6.16783 6.23623 6.34991 6.45085 6.51450 6.60342 6.74658 7.01800 7.09963 7.51300 7.56342 7.82323 8.12011 8.51853 8.84039 8.96253 9.44600 10.94603 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030968 B = 0.009638 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.954633 B = 2904.529082 C = 3388.621365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.294 4.294 3 C 0.192 3.808 4 N -0.580 5.580 5 C 0.564 3.436 6 N -0.552 5.552 7 C 0.105 3.895 8 C 0.232 3.768 9 H 0.072 0.928 10 C -0.147 4.147 11 C -0.525 4.525 12 H 0.078 0.922 13 C 0.079 3.921 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.262 1.262 19 N -0.566 5.566 20 C 0.194 3.806 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.155 0.845 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 4.446 6.603 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.303 4.303 3 C 0.023 3.977 4 N -0.303 5.303 5 C 0.209 3.791 6 N -0.263 5.263 7 C -0.039 4.039 8 C 0.131 3.869 9 H 0.090 0.910 10 C -0.206 4.206 11 C -0.563 4.563 12 H 0.096 0.904 13 C -0.125 4.125 14 N -0.528 5.528 15 Si 0.704 3.296 16 H -0.196 1.196 17 H -0.215 1.215 18 H -0.187 1.187 19 N -0.288 5.288 20 C 0.024 3.976 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.172 0.828 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.369 4.311 6.469 12.960 hybrid contribution -1.321 -0.835 0.086 1.566 sum -11.690 3.476 6.556 13.846 Atomic orbital electron populations 1.20346 0.90349 1.01993 1.01467 1.21063 0.98047 0.95627 1.15572 1.22654 0.88762 0.97470 0.88810 1.67955 1.09947 1.28837 1.23559 1.19501 0.87725 0.84177 0.87684 1.47067 0.98925 1.08791 1.71505 1.21473 0.97316 0.84961 1.00124 1.19423 0.91169 0.81823 0.94516 0.90994 1.22234 0.99707 1.01503 0.97128 1.21166 1.28775 0.96196 1.10179 0.90419 1.24965 0.94501 0.98821 0.94196 1.69896 1.34728 1.26100 1.22121 0.86852 0.80372 0.82236 0.80141 1.19617 1.21514 1.18708 1.67975 1.09778 1.28902 1.22166 1.22746 0.88751 0.97629 0.88447 0.92190 0.92160 0.92200 0.82758 0.94326 0.90403 0.91521 0.92486 0.93146 0.95601 0.92387 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.06 36.01 0.36 -0.46 16 2 C -0.29 -4.21 5.91 -104.35 -0.62 -4.83 16 3 C 0.19 2.96 11.00 -17.23 -0.19 2.77 16 4 N -0.58 -11.18 9.11 -13.93 -0.13 -11.30 16 5 C 0.56 12.31 8.18 -322.80 -2.64 9.67 16 6 N -0.55 -12.50 2.85 -177.61 -0.51 -13.00 16 7 C 0.10 2.04 9.59 59.85 0.57 2.61 16 8 C 0.23 5.67 2.32 -69.08 -0.16 5.51 16 9 H 0.07 1.85 3.92 -51.93 -0.20 1.65 16 10 C -0.15 -3.19 9.10 37.16 0.34 -2.85 16 11 C -0.52 -14.65 8.72 -34.44 -0.30 -14.95 16 12 H 0.08 2.32 6.82 -52.49 -0.36 1.96 16 13 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 14 N -0.89 -26.94 13.96 55.43 0.77 -26.16 16 15 Si 0.88 21.91 26.99 -169.99 -4.59 17.32 16 16 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.26 -6.29 6.82 56.52 0.39 -5.91 16 19 N -0.57 -12.13 8.85 -13.93 -0.12 -12.25 16 20 C 0.19 3.26 11.00 -17.22 -0.19 3.07 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 23 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 24 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.56 6.56 -51.93 -0.34 1.22 16 27 H 0.07 1.24 7.33 -51.93 -0.38 0.86 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 269.80 15.07 4.07 4.07 Total: -1.00 -31.98 269.80 -7.64 -39.62 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.22 Total: -0.99 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.92 Total: 2.71 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.02 Total: -62.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.98 -7.64 -39.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095875.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.695 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds