Wall clock time and date at job start Sun Mar 29 2020 22:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38603 * 120.72058 * 2 1 4 4 N 1.32273 * 119.19942 * 179.70366 * 3 2 1 5 5 C 1.32501 * 120.73580 * 0.27661 * 4 3 2 6 6 N 1.38408 * 119.21374 * 179.97438 * 5 4 3 7 7 C 1.46502 * 120.00426 * 359.97438 * 6 5 4 8 8 C 1.46503 * 119.99812 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.46666 * 359.97438 * 8 6 5 10 10 C 1.52999 * 109.46782 * 239.99650 * 8 6 5 11 11 C 1.50704 * 109.47169 * 119.99627 * 8 6 5 12 12 H 1.07997 * 119.99749 * 35.00441 * 11 8 6 13 13 C 1.37875 * 119.99837 * 215.00556 * 11 8 6 14 14 N 1.31515 * 119.99746 * 184.91933 * 13 11 8 15 15 Si 1.86805 * 120.00087 * 4.91010 * 13 11 8 16 16 H 1.48506 * 109.46591 * 84.84089 * 15 13 11 17 17 H 1.48494 * 109.46924 * 204.83613 * 15 13 11 18 18 H 1.48499 * 109.47343 * 324.84149 * 15 13 11 19 19 N 1.32489 * 121.56829 * 359.97438 * 5 4 3 20 20 C 1.32278 * 120.73911 * 0.02562 * 19 5 4 21 21 H 1.08994 * 109.47083 * 89.99523 * 1 2 3 22 22 H 1.08996 * 109.46877 * 210.00406 * 1 2 3 23 23 H 1.09005 * 109.46710 * 329.99934 * 1 2 3 24 24 H 1.08008 * 120.40469 * 359.97438 * 3 2 1 25 25 H 1.08997 * 109.46776 * 89.99817 * 7 6 5 26 26 H 1.08993 * 109.47124 * 210.00683 * 7 6 5 27 27 H 1.09003 * 109.46667 * 330.00055 * 7 6 5 28 28 H 1.09006 * 109.46625 * 174.97794 * 10 8 6 29 29 H 1.09003 * 109.47250 * 294.97582 * 10 8 6 30 30 H 1.08997 * 109.46967 * 54.97778 * 10 8 6 31 31 H 0.97004 * 119.99657 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.40169 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1915 0.0000 4 7 3.5373 1.1564 0.0060 5 6 4.1841 0.0000 0.0064 6 7 5.5681 0.0000 0.0122 7 6 6.3007 1.2687 0.0172 8 6 6.3006 -1.2688 0.0122 9 1 5.5923 -2.0972 0.0077 10 6 7.1751 -1.3527 1.2649 11 6 7.1721 -1.3457 -1.2149 12 1 7.6360 -0.4517 -1.6046 13 6 7.3772 -2.5574 -1.8399 14 7 8.2134 -2.6423 -2.8515 15 14 6.4675 -4.0785 -1.2498 16 1 5.1280 -4.1331 -1.8888 17 1 7.2410 -5.2916 -1.6175 18 1 6.3101 -4.0200 0.2256 19 7 3.5374 -1.1564 0.0014 20 6 2.2151 -1.1915 -0.0047 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6935 2.1373 -0.0004 25 1 6.4780 1.5817 1.0461 26 1 7.2551 1.1391 -0.4929 27 1 5.7137 2.0291 -0.4980 28 1 7.6511 -2.3323 1.3106 29 1 7.9409 -0.5780 1.2260 30 1 6.5562 -1.2078 2.1503 31 1 8.3579 -3.4949 -3.2910 32 1 1.6935 -2.1372 -0.0091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095875.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:00 Heat of formation + Delta-G solvation = 38.132963 kcal Electronic energy + Delta-G solvation = -15066.116121 eV Core-core repulsion = 12640.427670 eV Total energy + Delta-G solvation = -2425.688451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78558 -38.35336 -35.04946 -34.48251 -33.79872 -31.77467 -28.61089 -27.32491 -26.41172 -25.15282 -23.32202 -21.47810 -19.25127 -18.52139 -18.30365 -16.60416 -16.13844 -15.80197 -15.24062 -15.07326 -14.62285 -14.52039 -14.29684 -14.06205 -13.57222 -13.29445 -13.07897 -13.00491 -12.74520 -12.64953 -12.27050 -11.80620 -11.73340 -11.68756 -11.28691 -10.77759 -10.61847 -9.84113 -8.45919 -8.36207 -6.41587 0.38148 0.41721 1.31089 1.35448 1.45141 2.01836 2.29910 3.02143 3.07653 3.46617 3.79337 3.95404 4.23683 4.27548 4.48291 4.54948 4.63731 4.73230 4.79020 4.85931 4.97321 4.99641 5.09659 5.24698 5.26168 5.36673 5.54519 5.66711 5.99332 6.19281 6.26683 6.63438 6.79626 7.24872 7.52251 8.79545 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030968 B = 0.009638 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.954633 B = 2904.529082 C = 3388.621365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.268 4.268 3 C 0.180 3.820 4 N -0.593 5.593 5 C 0.539 3.461 6 N -0.576 5.576 7 C 0.113 3.887 8 C 0.238 3.762 9 H 0.062 0.938 10 C -0.139 4.139 11 C -0.524 4.524 12 H 0.042 0.958 13 C 0.025 3.975 14 N -0.939 5.939 15 Si 0.937 3.063 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.246 1.246 19 N -0.606 5.606 20 C 0.173 3.827 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.197 0.803 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.268 0.732 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.805 4.553 8.006 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.277 4.277 3 C 0.013 3.987 4 N -0.316 5.316 5 C 0.184 3.816 6 N -0.289 5.289 7 C -0.030 4.030 8 C 0.136 3.864 9 H 0.080 0.920 10 C -0.198 4.198 11 C -0.563 4.563 12 H 0.060 0.940 13 C -0.175 4.175 14 N -0.578 5.578 15 Si 0.761 3.239 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.169 1.169 19 N -0.329 5.329 20 C 0.005 3.995 21 H 0.091 0.909 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.214 0.786 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.418 4.439 7.892 16.187 hybrid contribution -0.600 -0.729 -0.365 1.012 sum -14.018 3.711 7.527 16.338 Atomic orbital electron populations 1.20466 0.86589 1.03986 1.02842 1.21581 1.00489 0.94269 1.11315 1.23470 0.87668 0.99798 0.87769 1.67961 1.11876 1.27934 1.23836 1.19599 0.87480 0.85226 0.89259 1.46797 0.99795 1.08467 1.73838 1.21421 0.96232 0.84236 1.01075 1.19155 0.90661 0.82856 0.93746 0.92013 1.22103 0.99568 1.01588 0.96573 1.21409 1.28674 0.94875 1.11349 0.93956 1.25743 0.95314 1.01940 0.94461 1.70023 1.36787 1.27001 1.23987 0.85903 0.78714 0.78748 0.80551 1.19990 1.20683 1.16933 1.67916 1.12078 1.29332 1.23546 1.23394 0.87679 1.00018 0.88364 0.90899 0.90576 0.89931 0.78620 0.92428 0.92201 0.91131 0.92629 0.92754 0.93774 0.92265 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.06 71.24 0.72 -0.47 16 2 C -0.27 -6.71 5.91 -19.69 -0.12 -6.83 16 3 C 0.18 4.97 11.00 84.71 0.93 5.90 16 4 N -0.59 -21.94 9.11 -197.98 -1.80 -23.75 16 5 C 0.54 23.22 8.18 261.48 2.14 25.36 16 6 N -0.58 -26.18 2.85 -715.82 -2.04 -28.22 16 7 C 0.11 4.47 9.59 127.77 1.23 5.69 16 8 C 0.24 11.72 2.32 44.25 0.10 11.82 16 9 H 0.06 3.16 3.92 -2.39 -0.01 3.15 16 10 C -0.14 -5.97 9.10 71.98 0.66 -5.31 16 11 C -0.52 -30.20 8.72 25.60 0.22 -29.97 16 12 H 0.04 2.67 6.82 -2.91 -0.02 2.65 16 13 C 0.02 1.44 5.47 84.65 0.46 1.90 16 14 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 15 Si 0.94 45.65 26.99 68.60 1.85 47.50 16 16 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 18 H -0.25 -11.19 6.82 99.48 0.68 -10.51 16 19 N -0.61 -25.32 8.85 -197.98 -1.75 -27.07 16 20 C 0.17 5.37 11.00 84.71 0.93 6.30 16 21 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 23 H 0.08 0.91 8.10 -2.38 -0.02 0.89 16 24 H 0.20 3.59 8.06 -2.91 -0.02 3.56 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 2.51 6.56 -2.39 -0.02 2.49 16 27 H 0.07 2.65 7.33 -2.39 -0.02 2.63 16 28 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.05 2.23 7.84 -2.39 -0.02 2.21 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 32 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -71.32 269.80 4.90 -66.41 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.08 Total: 8.97 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 7.27 Total: 14.38 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -5.30 Total: -137.27 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.85 Total: 47.50 kcal Total: -71.32 4.90 -66.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095875.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.546 kcal (2) G-P(sol) polarization free energy of solvation -71.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds