Wall clock time and date at job start Sun Mar 29 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38628 * 120.40093 * 2 1 4 4 C 1.38583 * 118.55553 * 179.71679 * 3 2 1 5 5 N 1.32293 * 119.19645 * 0.55788 * 4 3 2 6 6 C 1.32473 * 120.74254 * 359.73125 * 5 4 3 7 7 N 1.38408 * 119.21645 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99949 * 179.97438 * 7 6 5 9 9 C 1.46498 * 120.00028 * 359.97296 * 7 6 5 10 10 H 1.09001 * 109.47393 * 359.97438 * 9 7 6 11 11 C 1.53001 * 109.46995 * 240.00456 * 9 7 6 12 12 C 1.50692 * 109.47417 * 120.00342 * 9 7 6 13 13 H 1.08004 * 119.99967 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00359 * 179.97438 * 12 9 7 15 15 N 1.31518 * 119.99984 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 120.00243 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.46908 * 90.00319 * 16 14 12 18 18 H 1.48498 * 109.47068 * 210.00507 * 16 14 12 19 19 H 1.48507 * 109.46848 * 330.00431 * 16 14 12 20 20 N 1.32257 * 120.39851 * 180.28402 * 2 1 3 21 21 H 1.09001 * 109.46953 * 269.71880 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.71478 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.72108 * 1 2 3 24 24 H 1.07997 * 120.72278 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.39773 * 180.28691 * 4 3 2 26 26 H 1.08996 * 109.46868 * 89.99715 * 8 7 6 27 27 H 1.08996 * 109.46684 * 209.99602 * 8 7 6 28 28 H 1.08996 * 109.46693 * 329.98987 * 8 7 6 29 29 H 1.09001 * 109.47057 * 179.97438 * 11 9 7 30 30 H 1.08998 * 109.47178 * 299.99695 * 11 9 7 31 31 H 1.08995 * 109.47483 * 59.99867 * 11 9 7 32 32 H 0.96998 * 119.99675 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2086 1.1957 0.0000 4 6 3.5937 1.1511 0.0060 5 7 4.2015 -0.0239 0.0003 6 6 3.5014 -1.1485 -0.0057 7 7 4.1699 -2.3605 -0.0110 8 6 3.4126 -3.6147 -0.0171 9 6 5.6346 -2.3892 -0.0106 10 1 6.0180 -1.3688 -0.0062 11 6 6.1308 -3.1144 -1.2631 12 6 6.1225 -3.1149 1.2166 13 1 5.4125 -3.5146 1.9256 14 6 7.4752 -3.2689 1.4343 15 7 8.3398 -2.7819 0.5712 16 14 8.0800 -4.1680 2.9560 17 1 8.2162 -5.6156 2.6541 18 1 9.3993 -3.6209 3.3625 19 1 7.1052 -3.9822 4.0608 20 7 2.1763 -1.1407 -0.0057 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3634 0.8925 -0.5094 23 1 -0.3633 -0.8875 -0.5182 24 1 1.6871 2.1414 -0.0004 25 1 4.1699 2.0645 0.0109 26 1 3.2252 -3.9209 -1.0463 27 1 3.9866 -4.3880 0.4933 28 1 2.4629 -3.4681 0.4972 29 1 7.2206 -3.1353 -1.2630 30 1 5.7475 -4.1347 -1.2680 31 1 5.7779 -2.5895 -2.1507 32 1 9.2914 -2.8899 0.7246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:49 Heat of formation + Delta-G solvation = 57.314732 kcal Electronic energy + Delta-G solvation = -14998.724518 eV Core-core repulsion = 12573.867851 eV Total energy + Delta-G solvation = -2424.856667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29153 -36.53673 -33.69728 -33.09143 -31.14524 -28.93278 -28.19526 -25.81486 -25.19860 -22.50855 -22.35830 -19.62912 -17.06820 -16.48292 -16.14962 -15.02901 -14.73730 -14.63722 -13.88150 -13.40035 -13.30780 -12.76375 -12.49936 -12.35820 -12.11895 -11.58425 -11.27759 -11.01507 -10.82533 -10.63375 -10.38660 -10.18909 -10.09921 -9.98297 -9.52545 -8.96351 -8.50593 -8.27474 -6.92818 -6.05638 -4.13852 1.76993 1.85318 3.27202 3.33907 3.37198 3.66184 4.38846 4.53828 4.67444 4.99073 5.24718 5.31512 5.61847 5.65664 5.72105 5.73182 6.06535 6.13749 6.24769 6.28146 6.53581 6.73609 6.88846 6.92349 7.09432 7.45434 7.61389 7.69573 7.90079 8.07829 8.23027 8.52411 8.84538 9.11227 9.52073 10.98643 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040030 B = 0.007602 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.300643 B = 3682.324351 C = 3778.179081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.211 3.789 3 C -0.325 4.325 4 C 0.193 3.807 5 N -0.563 5.563 6 C 0.570 3.430 7 N -0.556 5.556 8 C 0.106 3.894 9 C 0.266 3.734 10 H 0.073 0.927 11 C -0.147 4.147 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.275 1.275 20 N -0.585 5.585 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.130 0.870 25 H 0.157 0.843 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.029 0.971 31 H 0.010 0.990 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 4.670 -1.666 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.061 3.939 3 C -0.352 4.352 4 C 0.023 3.977 5 N -0.285 5.285 6 C 0.215 3.785 7 N -0.266 5.266 8 C -0.038 4.038 9 C 0.166 3.834 10 H 0.091 0.909 11 C -0.205 4.205 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.200 1.200 20 N -0.311 5.311 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.148 0.852 25 H 0.174 0.826 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.196 3.515 -1.704 10.919 hybrid contribution -0.001 0.358 0.827 0.901 sum -10.197 3.872 -0.877 10.943 Atomic orbital electron populations 1.20691 0.89024 1.03144 1.02937 1.21249 0.96423 0.88015 0.88192 1.22076 0.96401 0.99355 1.17391 1.22849 0.91771 0.95256 0.87846 1.68066 1.40442 0.97842 1.22183 1.19466 0.84456 0.87267 0.87314 1.46998 1.08013 1.00236 1.71374 1.21432 0.96074 0.86066 1.00193 1.19076 0.71168 0.99294 0.93848 0.90934 1.22113 1.04602 0.97990 0.95829 1.21356 0.91843 1.36615 1.06606 0.92329 1.24867 0.96520 0.95559 0.96721 1.69880 1.02006 1.45315 1.35424 0.86494 0.78178 0.79710 0.83009 1.20586 1.21072 1.19998 1.67756 1.08145 1.30449 1.24729 0.90363 0.90728 0.90600 0.85179 0.82572 0.94399 0.90545 0.91844 0.88696 0.95187 0.97122 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.22 36.01 0.37 -0.76 16 2 C 0.21 3.42 6.82 -82.26 -0.56 2.86 16 3 C -0.32 -4.89 9.85 -39.31 -0.39 -5.27 16 4 C 0.19 3.32 11.30 -17.23 -0.19 3.13 16 5 N -0.56 -12.45 8.85 -13.93 -0.12 -12.57 16 6 C 0.57 12.86 8.17 -322.81 -2.64 10.22 16 7 N -0.56 -13.01 2.85 -177.61 -0.51 -13.52 16 8 C 0.11 2.13 9.44 59.85 0.56 2.69 16 9 C 0.27 6.94 2.66 -69.09 -0.18 6.76 16 10 H 0.07 2.10 6.76 -51.93 -0.35 1.74 16 11 C -0.15 -3.62 8.97 37.16 0.33 -3.29 16 12 C -0.53 -14.49 7.99 -34.45 -0.28 -14.77 16 13 H 0.06 1.62 7.33 -52.48 -0.38 1.24 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 15 N -0.89 -25.10 11.32 55.43 0.63 -24.48 16 16 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 N -0.59 -11.66 9.05 -10.15 -0.09 -11.75 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 25 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 28 H 0.06 1.19 7.33 -51.93 -0.38 0.81 16 29 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 30 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 270.91 15.07 4.08 4.08 Total: -1.00 -30.78 270.91 -8.39 -39.17 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.29 Total: -0.47 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.07 Total: 3.27 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.09 Total: -62.31 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.78 -8.39 -39.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.485 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds